Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_I20
(584 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35980|RL18_MOUSE 60S ribosomal protein L18 196 3e-50
sp|P12001|RL18_RAT 60S ribosomal protein L18 196 4e-50
sp|P69091|RL18_ORENI 60S ribosomal protein L18 >gi|59800182... 195 6e-50
sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18 195 6e-50
sp|Q07020|RL18_HUMAN 60S ribosomal protein L18 194 1e-49
sp|P42791|RL18_ARATH 60S ribosomal protein L18 182 5e-46
sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A) 181 9e-46
sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B) 181 9e-46
sp|O65729|RL18_CICAR 60S ribosomal protein L18 170 3e-42
sp|P07279|RL18_YEAST 60S ribosomal protein L18 (RP28) 141 1e-33
>sp|P35980|RL18_MOUSE 60S ribosomal protein L18
Length = 188
Score = 196 bits (499), Expect = 3e-50
Identities = 98/167 (58%), Positives = 127/167 (76%), Gaps = 1/167 (0%)
Frame = +2
Query: 2 IDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLS 178
+DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R PLS
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLS 62
Query: 179 IARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIIT 358
++R++++MK PGRE+K AVVVGTV DD+RI EVPKL +CALRV++ AR+RILKAGG+I+T
Sbjct: 63 LSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILT 122
Query: 359 FDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 499
FD+LAL +P G+GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 123 FDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P12001|RL18_RAT 60S ribosomal protein L18
Length = 188
Score = 196 bits (498), Expect = 4e-50
Identities = 97/167 (58%), Positives = 127/167 (76%), Gaps = 1/167 (0%)
Frame = +2
Query: 2 IDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLS 178
+DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R PLS
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLS 62
Query: 179 IARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIIT 358
++R++++MK PGRE+K AVVVGT+ DD+RI EVPKL +CALRV++ AR+RILKAGG+I+T
Sbjct: 63 LSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILT 122
Query: 359 FDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 499
FD+LAL +P G+GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 123 FDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P69091|RL18_ORENI 60S ribosomal protein L18
sp|P69090|RL18_OREMO 60S ribosomal protein L18
Length = 188
Score = 195 bits (496), Expect = 6e-50
Identities = 95/167 (56%), Positives = 127/167 (76%), Gaps = 1/167 (0%)
Frame = +2
Query: 2 IDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLS 178
+DI H K R V R PKS D Y RL KL+ +L R++ FN ++ +RL M+R R P++
Sbjct: 3 VDIRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIA 62
Query: 179 IARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIIT 358
++RL+++MK PGRE+KIAVVVGTV DD+RI+++PKL +CALRVT GAR RILKAGG+++T
Sbjct: 63 VSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMT 122
Query: 359 FDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 499
FD+LAL +P G+GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 123 FDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18
Length = 188
Score = 195 bits (496), Expect = 6e-50
Identities = 95/167 (56%), Positives = 127/167 (76%), Gaps = 1/167 (0%)
Frame = +2
Query: 2 IDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLS 178
+DI H K R V RT PKS D Y RL KL+ +L R+++ FN ++ KRL M++ R PL+
Sbjct: 3 VDIRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPPLA 62
Query: 179 IARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIIT 358
++RL+++MK GRE+KIAVVVGT+ DD+RI +PKL +CALRVTAGAR RILKAGG+++T
Sbjct: 63 LSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMT 122
Query: 359 FDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 499
FD+LA+ TP G+GTVLL GPR ++ G APG PHSHT+P++RS
Sbjct: 123 FDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRS 169
>sp|Q07020|RL18_HUMAN 60S ribosomal protein L18
Length = 188
Score = 194 bits (494), Expect = 1e-49
Identities = 96/167 (57%), Positives = 127/167 (76%), Gaps = 1/167 (0%)
Frame = +2
Query: 2 IDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLS 178
+DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R PLS
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLS 62
Query: 179 IARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIIT 358
++R++++MK PGRE+K AVVVGT+ DD+R++EVPKL +CALRVT+ AR+RIL+AGG+I+T
Sbjct: 63 LSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILT 122
Query: 359 FDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 499
FD+LAL +P G GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 123 FDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P42791|RL18_ARATH 60S ribosomal protein L18
Length = 187
Score = 182 bits (462), Expect = 5e-46
Identities = 89/161 (55%), Positives = 124/161 (77%)
Frame = +2
Query: 17 KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMK 196
K++ KRT PKS+D Y +L+ KL+ +L R+T KFNG+I KRL M++ + PLS++RL++
Sbjct: 10 KSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVE 69
Query: 197 QMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELAL 376
M G+EDKIAV+VGT+ DDLR+ E+P + + ALR T ARARI KAGGE +TFD+LAL
Sbjct: 70 FMT--GKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLAL 127
Query: 377 RTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 499
R PLG+ TVLL+GP++ + K+ G APGVPHSH++P+VR+
Sbjct: 128 RAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRA 168
>sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A)
Length = 188
Score = 181 bits (460), Expect = 9e-46
Identities = 91/167 (54%), Positives = 121/167 (72%), Gaps = 1/167 (0%)
Frame = +2
Query: 2 IDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLS 178
IDI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R PLS
Sbjct: 3 IDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLS 62
Query: 179 IARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIIT 358
++RL+++MK P RE+K AVVVG + D+RI ++PKLT+CAL++T+GAR+RILKAGG+I+T
Sbjct: 63 MSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMT 122
Query: 359 FDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 499
FD+LAL P G+ TVLL GPR ++ G AP PHS T+P+V S
Sbjct: 123 FDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLS 169
>sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B)
Length = 188
Score = 181 bits (460), Expect = 9e-46
Identities = 90/167 (53%), Positives = 121/167 (72%), Gaps = 1/167 (0%)
Frame = +2
Query: 2 IDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLS 178
IDI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R PLS
Sbjct: 3 IDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLS 62
Query: 179 IARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIIT 358
++RL+++MK GRE+K AVVVG + DD+RI ++PKL +CAL++T+G R+RILK+GG+I+T
Sbjct: 63 MSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMT 122
Query: 359 FDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 499
FD+LAL P G+ TVLL GPR ++ G APG PHS T+P+V S
Sbjct: 123 FDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLS 169
>sp|O65729|RL18_CICAR 60S ribosomal protein L18
Length = 183
Score = 170 bits (430), Expect = 3e-42
Identities = 88/161 (54%), Positives = 118/161 (73%)
Frame = +2
Query: 17 KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMK 196
K + KRT+PKSND Y +L KL+ +L R+T+ FN +I KRL M++ R PLS++RL+K
Sbjct: 7 KNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIK 66
Query: 197 QMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELAL 376
M+ G+E KI VVVG V DD+R+ +VP + + AL+ T ARARI KAGGE +TFD+LAL
Sbjct: 67 YMQ--GKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLAL 124
Query: 377 RTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 499
R PL TVLL+GP++ + K+ G APGVPHSHT+P+VRS
Sbjct: 125 RLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRS 164
>sp|P07279|RL18_YEAST 60S ribosomal protein L18 (RP28)
Length = 186
Score = 141 bits (355), Expect = 1e-33
Identities = 70/155 (45%), Positives = 105/155 (67%)
Frame = +2
Query: 35 RTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPG 214
RT PKS++ Y +L KL+++L R+T+ FN ++ K L +++ R P+S++R+ + +K+ G
Sbjct: 16 RTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEG 75
Query: 215 REDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGK 394
+K VVVGTV DD RI E PK T+ ALR TAGARA+I+KAGGE IT D+LA+R P G+
Sbjct: 76 AANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQ 135
Query: 395 GTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 499
T++L+GPR+ + ++ G PH P + S
Sbjct: 136 NTLILRGPRNSREAVRHFGMG---PHKGKAPRILS 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,322,157
Number of Sequences: 369166
Number of extensions: 1007816
Number of successful extensions: 2679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2666
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)