Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_M05
(616 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35980|RL18_MOUSE 60S ribosomal protein L18 201 2e-51
sp|P12001|RL18_RAT 60S ribosomal protein L18 200 2e-51
sp|P69091|RL18_ORENI 60S ribosomal protein L18 >gi|59800182... 199 4e-51
sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18 199 4e-51
sp|Q07020|RL18_HUMAN 60S ribosomal protein L18 199 6e-51
sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A) 186 5e-47
sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B) 186 5e-47
sp|P42791|RL18_ARATH 60S ribosomal protein L18 185 7e-47
sp|O65729|RL18_CICAR 60S ribosomal protein L18 170 3e-42
sp|P07279|RL18_YEAST 60S ribosomal protein L18 (RP28) 144 2e-34
>sp|P35980|RL18_MOUSE 60S ribosomal protein L18
Length = 188
Score = 201 bits (510), Expect = 2e-51
Identities = 100/169 (59%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
Frame = +1
Query: 28 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 204
MG+DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 205 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 384
LS++R++++MK PGRE+K AVVVGTV DD+RI EVPKL +CALRV++ AR+RILKAGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKI 120
Query: 385 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 531
+TFD+LAL +P G+GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 121 LTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P12001|RL18_RAT 60S ribosomal protein L18
Length = 188
Score = 200 bits (509), Expect = 2e-51
Identities = 99/169 (58%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
Frame = +1
Query: 28 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 204
MG+DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 205 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 384
LS++R++++MK PGRE+K AVVVGT+ DD+RI EVPKL +CALRV++ AR+RILKAGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKI 120
Query: 385 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 531
+TFD+LAL +P G+GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 121 LTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P69091|RL18_ORENI 60S ribosomal protein L18
sp|P69090|RL18_OREMO 60S ribosomal protein L18
Length = 188
Score = 199 bits (507), Expect = 4e-51
Identities = 97/169 (57%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
Frame = +1
Query: 28 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 204
MG+DI H K R V R PKS D Y RL KL+ +L R++ FN ++ +RL M+R R P
Sbjct: 1 MGVDIRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPP 60
Query: 205 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 384
++++RL+++MK PGRE+KIAVVVGTV DD+RI+++PKL +CALRVT GAR RILKAGG++
Sbjct: 61 IAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQV 120
Query: 385 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 531
+TFD+LAL +P G+GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 121 MTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18
Length = 188
Score = 199 bits (507), Expect = 4e-51
Identities = 97/169 (57%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
Frame = +1
Query: 28 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 204
MG+DI H K R V RT PKS D Y RL KL+ +L R+++ FN ++ KRL M++ R P
Sbjct: 1 MGVDIRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPP 60
Query: 205 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 384
L+++RL+++MK GRE+KIAVVVGT+ DD+RI +PKL +CALRVTAGAR RILKAGG++
Sbjct: 61 LALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQV 120
Query: 385 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 531
+TFD+LA+ TP G+GTVLL GPR ++ G APG PHSHT+P++RS
Sbjct: 121 MTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRS 169
>sp|Q07020|RL18_HUMAN 60S ribosomal protein L18
Length = 188
Score = 199 bits (505), Expect = 6e-51
Identities = 98/169 (57%), Positives = 129/169 (76%), Gaps = 1/169 (0%)
Frame = +1
Query: 28 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 204
MG+DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 205 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 384
LS++R++++MK PGRE+K AVVVGT+ DD+R++EVPKL +CALRVT+ AR+RIL+AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 385 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 531
+TFD+LAL +P G GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A)
Length = 188
Score = 186 bits (471), Expect = 5e-47
Identities = 93/169 (55%), Positives = 123/169 (72%), Gaps = 1/169 (0%)
Frame = +1
Query: 28 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 204
MGIDI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGIDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPP 60
Query: 205 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 384
LS++RL+++MK P RE+K AVVVG + D+RI ++PKLT+CAL++T+GAR+RILKAGG+I
Sbjct: 61 LSMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQI 120
Query: 385 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 531
+TFD+LAL P G+ TVLL GPR ++ G AP PHS T+P+V S
Sbjct: 121 MTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLS 169
>sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B)
Length = 188
Score = 186 bits (471), Expect = 5e-47
Identities = 92/169 (54%), Positives = 123/169 (72%), Gaps = 1/169 (0%)
Frame = +1
Query: 28 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 204
MGIDI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGIDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPP 60
Query: 205 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 384
LS++RL+++MK GRE+K AVVVG + DD+RI ++PKL +CAL++T+G R+RILK+GG+I
Sbjct: 61 LSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQI 120
Query: 385 ITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 531
+TFD+LAL P G+ TVLL GPR ++ G APG PHS T+P+V S
Sbjct: 121 MTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLS 169
>sp|P42791|RL18_ARATH 60S ribosomal protein L18
Length = 187
Score = 185 bits (470), Expect = 7e-47
Identities = 93/170 (54%), Positives = 129/170 (75%), Gaps = 2/170 (1%)
Frame = +1
Query: 28 MGIDI--SHKTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQ 201
MGID+ K++ KRT PKS+D Y +L+ KL+ +L R+T KFNG+I KRL M++ +
Sbjct: 1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60
Query: 202 PLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGE 381
PLS++RL++ M G+EDKIAV+VGT+ DDLR+ E+P + + ALR T ARARI KAGGE
Sbjct: 61 PLSLSRLVEFMT--GKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGE 118
Query: 382 IITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 531
+TFD+LALR PLG+ TVLL+GP++ + K+ G APGVPHSH++P+VR+
Sbjct: 119 CLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRA 168
>sp|O65729|RL18_CICAR 60S ribosomal protein L18
Length = 183
Score = 170 bits (430), Expect = 3e-42
Identities = 88/161 (54%), Positives = 118/161 (73%)
Frame = +1
Query: 49 KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMK 228
K + KRT+PKSND Y +L KL+ +L R+T+ FN +I KRL M++ R PLS++RL+K
Sbjct: 7 KNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIK 66
Query: 229 QMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELAL 408
M+ G+E KI VVVG V DD+R+ +VP + + AL+ T ARARI KAGGE +TFD+LAL
Sbjct: 67 YMQ--GKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLAL 124
Query: 409 RTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 531
R PL TVLL+GP++ + K+ G APGVPHSHT+P+VRS
Sbjct: 125 RLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRS 164
>sp|P07279|RL18_YEAST 60S ribosomal protein L18 (RP28)
Length = 186
Score = 144 bits (363), Expect = 2e-34
Identities = 76/170 (44%), Positives = 112/170 (65%), Gaps = 2/170 (1%)
Frame = +1
Query: 28 MGIDISHKT--RIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQ 201
MGID + K R RT PKS++ Y +L KL+++L R+T+ FN ++ K L +++ R
Sbjct: 1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRP 60
Query: 202 PLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGE 381
P+S++R+ + +K+ G +K VVVGTV DD RI E PK T+ ALR TAGARA+I+KAGGE
Sbjct: 61 PVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGE 120
Query: 382 IITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 531
IT D+LA+R P G+ T++L+GPR+ + ++ G PH P + S
Sbjct: 121 CITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILS 167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,091,782
Number of Sequences: 369166
Number of extensions: 1112821
Number of successful extensions: 3048
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3035
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)