Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_B15
(358 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q07020|RL18_HUMAN 60S ribosomal protein L18 125 4e-29
sp|P35980|RL18_MOUSE 60S ribosomal protein L18 123 1e-28
sp|P69091|RL18_ORENI 60S ribosomal protein L18 >gi|59800182... 123 1e-28
sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18 123 1e-28
sp|P12001|RL18_RAT 60S ribosomal protein L18 122 2e-28
sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A) 119 2e-27
sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B) 118 5e-27
sp|Q95342|RL18_PIG 60S ribosomal protein L18 114 9e-26
sp|P42791|RL18_ARATH 60S ribosomal protein L18 108 4e-24
sp|O65729|RL18_CICAR 60S ribosomal protein L18 99 3e-21
>sp|Q07020|RL18_HUMAN 60S ribosomal protein L18
Length = 188
Score = 125 bits (313), Expect = 4e-29
Identities = 62/111 (55%), Positives = 84/111 (75%), Gaps = 1/111 (0%)
Frame = +3
Query: 27 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 203
MG+DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 204 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARA 356
LS++R++++MK PGRE+K AVVVGT+ DD+R++EVPKL +CALRVT+ AR+
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARS 111
>sp|P35980|RL18_MOUSE 60S ribosomal protein L18
Length = 188
Score = 123 bits (308), Expect = 1e-28
Identities = 63/111 (56%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Frame = +3
Query: 27 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 203
MG+DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 204 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARA 356
LS++R++++MK PGRE+K AVVVGTV DD+RI EVPKL +CALRV++ AR+
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARS 111
>sp|P69091|RL18_ORENI 60S ribosomal protein L18
sp|P69090|RL18_OREMO 60S ribosomal protein L18
Length = 188
Score = 123 bits (308), Expect = 1e-28
Identities = 61/110 (55%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Frame = +3
Query: 27 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 203
MG+DI H K R V R PKS D Y RL KL+ +L R++ FN ++ +RL M+R R P
Sbjct: 1 MGVDIRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPP 60
Query: 204 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGAR 353
++++RL+++MK PGRE+KIAVVVGTV DD+RI+++PKL +CALRVT GAR
Sbjct: 61 IAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGAR 110
>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18
Length = 188
Score = 123 bits (308), Expect = 1e-28
Identities = 62/110 (56%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Frame = +3
Query: 27 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 203
MG+DI H K R V RT PKS D Y RL KL+ +L R+++ FN ++ KRL M++ R P
Sbjct: 1 MGVDIRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPP 60
Query: 204 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGAR 353
L+++RL+++MK GRE+KIAVVVGT+ DD+RI +PKL +CALRVTAGAR
Sbjct: 61 LALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGAR 110
>sp|P12001|RL18_RAT 60S ribosomal protein L18
Length = 188
Score = 122 bits (307), Expect = 2e-28
Identities = 62/111 (55%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
Frame = +3
Query: 27 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 203
MG+DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 204 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARA 356
LS++R++++MK PGRE+K AVVVGT+ DD+RI EVPKL +CALRV++ AR+
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARS 111
>sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A)
Length = 188
Score = 119 bits (298), Expect = 2e-27
Identities = 60/111 (54%), Positives = 82/111 (73%), Gaps = 1/111 (0%)
Frame = +3
Query: 27 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 203
MGIDI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGIDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPP 60
Query: 204 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARA 356
LS++RL+++MK P RE+K AVVVG + D+RI ++PKLT+CAL++T+GAR+
Sbjct: 61 LSMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARS 111
>sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B)
Length = 188
Score = 118 bits (295), Expect = 5e-27
Identities = 59/111 (53%), Positives = 81/111 (72%), Gaps = 1/111 (0%)
Frame = +3
Query: 27 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 203
MGIDI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGIDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPP 60
Query: 204 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARA 356
LS++RL+++MK GRE+K AVVVG + DD+RI ++PKL +CAL++T+G R+
Sbjct: 61 LSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRS 111
>sp|Q95342|RL18_PIG 60S ribosomal protein L18
Length = 104
Score = 114 bits (284), Expect = 9e-26
Identities = 58/104 (55%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Frame = +3
Query: 27 MGIDISH-KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 203
MG+DI H K R V+R PKS D Y RL KL +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLXRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 204 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALR 335
LS++R+ ++MK PGRE K AVVVGT+ DD+R +EVPKL +CALR
Sbjct: 61 LSLSRMXRKMKLPGREGKTAVVVGTITDDVRFQEVPKLKVCALR 104
>sp|P42791|RL18_ARATH 60S ribosomal protein L18
Length = 187
Score = 108 bits (270), Expect = 4e-24
Identities = 57/112 (50%), Positives = 81/112 (72%), Gaps = 2/112 (1%)
Frame = +3
Query: 27 MGIDI--SHKTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQ 200
MGID+ K++ KRT PKS+D Y +L+ KL+ +L R+T KFNG+I KRL M++ +
Sbjct: 1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60
Query: 201 PLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARA 356
PLS++RL++ M G+EDKIAV+VGT+ DDLR+ E+P + + ALR T ARA
Sbjct: 61 PLSLSRLVEFM--TGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARA 110
>sp|O65729|RL18_CICAR 60S ribosomal protein L18
Length = 183
Score = 99.0 bits (245), Expect = 3e-21
Identities = 51/103 (49%), Positives = 72/103 (69%)
Frame = +3
Query: 48 KTRIVKRTTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMK 227
K + KRT+PKSND Y +L KL+ +L R+T+ FN +I KRL M++ R PLS++RL+K
Sbjct: 7 KNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIK 66
Query: 228 QMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARA 356
M+ G+E KI VVVG V DD+R+ +VP + + AL+ T ARA
Sbjct: 67 YMQ--GKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARA 107
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,505,503
Number of Sequences: 369166
Number of extensions: 549433
Number of successful extensions: 1515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 68,354,980
effective HSP length: 86
effective length of database: 52,467,770
effective search space used: 1678968640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)