Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_P05
(530 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35980|RL18_MOUSE 60S ribosomal protein L18 181 7e-46
sp|P69091|RL18_ORENI 60S ribosomal protein L18 >gi|59800182... 181 7e-46
sp|P12001|RL18_RAT 60S ribosomal protein L18 181 1e-45
sp|Q07020|RL18_HUMAN 60S ribosomal protein L18 179 3e-45
sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18 179 4e-45
sp|P42791|RL18_ARATH 60S ribosomal protein L18 168 9e-42
sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A) 166 3e-41
sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B) 166 3e-41
sp|O65729|RL18_CICAR 60S ribosomal protein L18 154 2e-37
sp|P50885|RL18_TRYBB 60S ribosomal protein L18 132 7e-31
>sp|P35980|RL18_MOUSE 60S ribosomal protein L18
Length = 188
Score = 181 bits (460), Expect = 7e-46
Identities = 88/148 (59%), Positives = 115/148 (77%)
Frame = +2
Query: 2 DSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAV 181
D Y RL KL+ +L R+T FN ++ KRL M+R R PLS++R++++MK PGRE+K AV
Sbjct: 22 DIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAV 81
Query: 182 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 361
VVGTV DD+RI EVPKL +CALRV++ AR+RILKAGG+I+TFD+LAL +P G+GTVLL G
Sbjct: 82 VVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSG 141
Query: 362 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 445
PR ++ G APG PHSHT+P+VRS
Sbjct: 142 PRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P69091|RL18_ORENI 60S ribosomal protein L18
sp|P69090|RL18_OREMO 60S ribosomal protein L18
Length = 188
Score = 181 bits (460), Expect = 7e-46
Identities = 85/148 (57%), Positives = 116/148 (78%)
Frame = +2
Query: 2 DSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAV 181
D Y RL KL+ +L R++ FN ++ +RL M+R R P++++RL+++MK PGRE+KIAV
Sbjct: 22 DIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKIAV 81
Query: 182 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 361
VVGTV DD+RI+++PKL +CALRVT GAR RILKAGG+++TFD+LAL +P G+GTVLL G
Sbjct: 82 VVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSG 141
Query: 362 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 445
PR ++ G APG PHSHT+P+VRS
Sbjct: 142 PRKAREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P12001|RL18_RAT 60S ribosomal protein L18
Length = 188
Score = 181 bits (459), Expect = 1e-45
Identities = 87/148 (58%), Positives = 115/148 (77%)
Frame = +2
Query: 2 DSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAV 181
D Y RL KL+ +L R+T FN ++ KRL M+R R PLS++R++++MK PGRE+K AV
Sbjct: 22 DIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAV 81
Query: 182 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 361
VVGT+ DD+RI EVPKL +CALRV++ AR+RILKAGG+I+TFD+LAL +P G+GTVLL G
Sbjct: 82 VVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSG 141
Query: 362 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 445
PR ++ G APG PHSHT+P+VRS
Sbjct: 142 PRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|Q07020|RL18_HUMAN 60S ribosomal protein L18
Length = 188
Score = 179 bits (455), Expect = 3e-45
Identities = 86/148 (58%), Positives = 115/148 (77%)
Frame = +2
Query: 2 DSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAV 181
D Y RL KL+ +L R+T FN ++ KRL M+R R PLS++R++++MK PGRE+K AV
Sbjct: 22 DIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAV 81
Query: 182 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 361
VVGT+ DD+R++EVPKL +CALRVT+ AR+RIL+AGG+I+TFD+LAL +P G GTVLL G
Sbjct: 82 VVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSG 141
Query: 362 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 445
PR ++ G APG PHSHT+P+VRS
Sbjct: 142 PRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18
Length = 188
Score = 179 bits (454), Expect = 4e-45
Identities = 84/148 (56%), Positives = 115/148 (77%)
Frame = +2
Query: 2 DSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAV 181
D Y RL KL+ +L R+++ FN ++ KRL M++ R PL+++RL+++MK GRE+KIAV
Sbjct: 22 DIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPPLALSRLIRKMKLQGRENKIAV 81
Query: 182 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 361
VVGT+ DD+RI +PKL +CALRVTAGAR RILKAGG+++TFD+LA+ TP G+GTVLL G
Sbjct: 82 VVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLLSG 141
Query: 362 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 445
PR ++ G APG PHSHT+P++RS
Sbjct: 142 PRKAREVYRHFGKAPGTPHSHTKPYIRS 169
>sp|P42791|RL18_ARATH 60S ribosomal protein L18
Length = 187
Score = 168 bits (425), Expect = 9e-42
Identities = 82/148 (55%), Positives = 114/148 (77%)
Frame = +2
Query: 2 DSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAV 181
D Y +L+ KL+ +L R+T KFNG+I KRL M++ + PLS++RL++ M G+EDKIAV
Sbjct: 23 DVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMT--GKEDKIAV 80
Query: 182 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 361
+VGT+ DDLR+ E+P + + ALR T ARARI KAGGE +TFD+LALR PLG+ TVLL+G
Sbjct: 81 LVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRG 140
Query: 362 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 445
P++ + K+ G APGVPHSH++P+VR+
Sbjct: 141 PKNSREAVKHFGPAPGVPHSHSKPYVRA 168
>sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A)
Length = 188
Score = 166 bits (420), Expect = 3e-41
Identities = 80/148 (54%), Positives = 109/148 (73%)
Frame = +2
Query: 2 DSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAV 181
D Y RL KL+ +L R+T FN ++ KRL M+R R PLS++RL+++MK P RE+K AV
Sbjct: 22 DIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLPRRENKTAV 81
Query: 182 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 361
VVG + D+RI ++PKLT+CAL++T+GAR+RILKAGG+I+TFD+LAL P G+ TVLL G
Sbjct: 82 VVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMTFDQLALAAPKGQNTVLLSG 141
Query: 362 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 445
PR ++ G AP PHS T+P+V S
Sbjct: 142 PRKAREVYRHFGKAPSTPHSRTKPYVLS 169
>sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B)
Length = 188
Score = 166 bits (420), Expect = 3e-41
Identities = 79/148 (53%), Positives = 109/148 (73%)
Frame = +2
Query: 2 DSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAV 181
D Y RL KL+ +L R+T FN ++ KRL M+R R PLS++RL+++MK GRE+K AV
Sbjct: 22 DIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLQGRENKTAV 81
Query: 182 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 361
VVG + DD+RI ++PKL +CAL++T+G R+RILK+GG+I+TFD+LAL P G+ TVLL G
Sbjct: 82 VVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMTFDQLALAAPKGQNTVLLSG 141
Query: 362 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 445
PR ++ G APG PHS T+P+V S
Sbjct: 142 PRKAREVYRHFGKAPGTPHSRTKPYVLS 169
>sp|O65729|RL18_CICAR 60S ribosomal protein L18
Length = 183
Score = 154 bits (388), Expect = 2e-37
Identities = 80/148 (54%), Positives = 108/148 (72%)
Frame = +2
Query: 2 DSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAV 181
D Y +L KL+ +L R+T+ FN +I KRL M++ R PLS++RL+K M+ G+E KI V
Sbjct: 20 DIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQ--GKEGKIGV 77
Query: 182 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 361
VVG V DD+R+ +VP + + AL+ T ARARI KAGGE +TFD+LALR PL TVLL+G
Sbjct: 78 VVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRG 136
Query: 362 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 445
P++ + K+ G APGVPHSHT+P+VRS
Sbjct: 137 PKNAREAVKHFGPAPGVPHSHTKPYVRS 164
>sp|P50885|RL18_TRYBB 60S ribosomal protein L18
Length = 193
Score = 132 bits (331), Expect = 7e-31
Identities = 70/152 (46%), Positives = 98/152 (64%), Gaps = 6/152 (3%)
Frame = +2
Query: 8 YTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMK------KPGRED 169
Y +L KL+ +L ++T FN +I KRL +R R P+S++R+ M+ K G++
Sbjct: 25 YIKLLIKLYKFLGKRTNSPFNKLIHKRLLKSRNNRAPISLSRIAVCMRRRTVWLKKGKKS 84
Query: 170 KIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTV 349
IAV+VG V DD+R+ +P L +CALR + AR RI AGGE +TFD+LA+ P GK T+
Sbjct: 85 PIAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTM 144
Query: 350 LLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 445
LL+G +S S K+ GAA GVP SH +PHV S
Sbjct: 145 LLRGRKSGRESVKHFGAA-GVPGSHAKPHVSS 175
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,165,150
Number of Sequences: 369166
Number of extensions: 883116
Number of successful extensions: 2374
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2362
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)