Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_I21
(913 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35980|RL18_MOUSE 60S ribosomal protein L18 172 1e-42
sp|P12001|RL18_RAT 60S ribosomal protein L18 172 2e-42
sp|P69091|RL18_ORENI 60S ribosomal protein L18 >gi|59800182... 171 3e-42
sp|Q07020|RL18_HUMAN 60S ribosomal protein L18 170 4e-42
sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18 169 1e-41
sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A) 165 2e-40
sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B) 162 9e-40
sp|P42791|RL18_ARATH 60S ribosomal protein L18 155 2e-37
sp|P07279|RL18_YEAST 60S ribosomal protein L18 (RP28) 137 4e-32
sp|O65729|RL18_CICAR 60S ribosomal protein L18 137 5e-32
>sp|P35980|RL18_MOUSE 60S ribosomal protein L18
Length = 188
Score = 172 bits (436), Expect = 1e-42
Identities = 87/143 (60%), Positives = 112/143 (78%), Gaps = 1/143 (0%)
Frame = +3
Query: 459 MGIDISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 635
MG+DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 636 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 815
LS++R++++MK PGRE+K AVVVGTV DD+RI EVPKL +CALRV++ AR+RILKAGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKI 120
Query: 816 ITFDELALRTPLGKGTVLLQGPR 884
+TFD+LAL +P G+GTVLL GPR
Sbjct: 121 LTFDQLALESPKGRGTVLLSGPR 143
>sp|P12001|RL18_RAT 60S ribosomal protein L18
Length = 188
Score = 172 bits (435), Expect = 2e-42
Identities = 86/143 (60%), Positives = 112/143 (78%), Gaps = 1/143 (0%)
Frame = +3
Query: 459 MGIDISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 635
MG+DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 636 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 815
LS++R++++MK PGRE+K AVVVGT+ DD+RI EVPKL +CALRV++ AR+RILKAGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKI 120
Query: 816 ITFDELALRTPLGKGTVLLQGPR 884
+TFD+LAL +P G+GTVLL GPR
Sbjct: 121 LTFDQLALESPKGRGTVLLSGPR 143
>sp|P69091|RL18_ORENI 60S ribosomal protein L18
sp|P69090|RL18_OREMO 60S ribosomal protein L18
Length = 188
Score = 171 bits (432), Expect = 3e-42
Identities = 84/143 (58%), Positives = 112/143 (78%), Gaps = 1/143 (0%)
Frame = +3
Query: 459 MGIDISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 635
MG+DI H K R V R PKS D Y RL KL+ +L R++ FN ++ +RL M+R R P
Sbjct: 1 MGVDIRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPP 60
Query: 636 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 815
++++RL+++MK PGRE+KIAVVVGTV DD+RI+++PKL +CALRVT GAR RILKAGG++
Sbjct: 61 IAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQV 120
Query: 816 ITFDELALRTPLGKGTVLLQGPR 884
+TFD+LAL +P G+GTVLL GPR
Sbjct: 121 MTFDQLALASPKGQGTVLLSGPR 143
>sp|Q07020|RL18_HUMAN 60S ribosomal protein L18
Length = 188
Score = 170 bits (431), Expect = 4e-42
Identities = 85/143 (59%), Positives = 112/143 (78%), Gaps = 1/143 (0%)
Frame = +3
Query: 459 MGIDISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 635
MG+DI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 636 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 815
LS++R++++MK PGRE+K AVVVGT+ DD+R++EVPKL +CALRVT+ AR+RIL+AGG+I
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI 120
Query: 816 ITFDELALRTPLGKGTVLLQGPR 884
+TFD+LAL +P G GTVLL GPR
Sbjct: 121 LTFDQLALDSPKGCGTVLLSGPR 143
>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18
Length = 188
Score = 169 bits (428), Expect = 1e-41
Identities = 84/143 (58%), Positives = 112/143 (78%), Gaps = 1/143 (0%)
Frame = +3
Query: 459 MGIDISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 635
MG+DI H K R V R+ PKS D Y RL KL+ +L R+++ FN ++ KRL M++ R P
Sbjct: 1 MGVDIRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPP 60
Query: 636 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 815
L+++RL+++MK GRE+KIAVVVGT+ DD+RI +PKL +CALRVTAGAR RILKAGG++
Sbjct: 61 LALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQV 120
Query: 816 ITFDELALRTPLGKGTVLLQGPR 884
+TFD+LA+ TP G+GTVLL GPR
Sbjct: 121 MTFDQLAVTTPKGQGTVLLSGPR 143
>sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A)
Length = 188
Score = 165 bits (417), Expect = 2e-40
Identities = 83/143 (58%), Positives = 109/143 (76%), Gaps = 1/143 (0%)
Frame = +3
Query: 459 MGIDISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 635
MGIDI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGIDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPP 60
Query: 636 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 815
LS++RL+++MK P RE+K AVVVG + D+RI ++PKLT+CAL++T+GAR+RILKAGG+I
Sbjct: 61 LSMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQI 120
Query: 816 ITFDELALRTPLGKGTVLLQGPR 884
+TFD+LAL P G+ TVLL GPR
Sbjct: 121 MTFDQLALAAPKGQNTVLLSGPR 143
>sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B)
Length = 188
Score = 162 bits (411), Expect = 9e-40
Identities = 81/143 (56%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
Frame = +3
Query: 459 MGIDISH-KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQP 635
MGIDI H K R V+R PKS D Y RL KL+ +L R+T FN ++ KRL M+R R P
Sbjct: 1 MGIDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPP 60
Query: 636 LSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEI 815
LS++RL+++MK GRE+K AVVVG + DD+RI ++PKL +CAL++T+G R+RILK+GG+I
Sbjct: 61 LSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQI 120
Query: 816 ITFDELALRTPLGKGTVLLQGPR 884
+TFD+LAL P G+ TVLL GPR
Sbjct: 121 MTFDQLALAAPKGQNTVLLSGPR 143
>sp|P42791|RL18_ARATH 60S ribosomal protein L18
Length = 187
Score = 155 bits (391), Expect = 2e-37
Identities = 80/152 (52%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
Frame = +3
Query: 459 MGIDI--SHKTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQ 632
MGID+ K++ KR+ PKS+D Y +L+ KL+ +L R+T KFNG+I KRL M++ +
Sbjct: 1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60
Query: 633 PLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGE 812
PLS++RL++ M G+EDKIAV+VGT+ DDLR+ E+P + + ALR T ARARI KAGGE
Sbjct: 61 PLSLSRLVEFMT--GKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGE 118
Query: 813 IITFDELALRTPLGKGTVLLQGPRSQTTSQKY 908
+TFD+LALR PLG+ TVLL+GP++ + K+
Sbjct: 119 CLTFDQLALRAPLGQNTVLLRGPKNSREAVKH 150
>sp|P07279|RL18_YEAST 60S ribosomal protein L18 (RP28)
Length = 186
Score = 137 bits (345), Expect = 4e-32
Identities = 70/152 (46%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Frame = +3
Query: 459 MGIDISHKT--RIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQ 632
MGID + K R R+ PKS++ Y +L KL+++L R+T+ FN ++ K L +++ R
Sbjct: 1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRP 60
Query: 633 PLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGE 812
P+S++R+ + +K+ G +K VVVGTV DD RI E PK T+ ALR TAGARA+I+KAGGE
Sbjct: 61 PVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGE 120
Query: 813 IITFDELALRTPLGKGTVLLQGPRSQTTSQKY 908
IT D+LA+R P G+ T++L+GPR+ + ++
Sbjct: 121 CITLDQLAVRAPKGQNTLILRGPRNSREAVRH 152
>sp|O65729|RL18_CICAR 60S ribosomal protein L18
Length = 183
Score = 137 bits (344), Expect = 5e-32
Identities = 73/143 (51%), Positives = 102/143 (71%)
Frame = +3
Query: 480 KTRIVKRSTPKSNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMK 659
K + KR++PKSND Y +L KL+ +L R+T+ FN +I KRL M++ R PLS++RL+K
Sbjct: 7 KNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIK 66
Query: 660 QMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELAL 839
M+ G+E KI VVVG V DD+R+ +VP + + AL+ T ARARI KAGGE +TFD+LAL
Sbjct: 67 YMQ--GKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLAL 124
Query: 840 RTPLGKGTVLLQGPRSQTTSQKY 908
R PL TVLL+GP++ + K+
Sbjct: 125 RLPL-TDTVLLRGPKNAREAVKH 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,487,326
Number of Sequences: 369166
Number of extensions: 1860900
Number of successful extensions: 4678
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4669
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9270587090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)