Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_K15
(385 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P69091|RL18_ORENI 60S ribosomal protein L18 >gi|59800182... 143 1e-34
sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18 139 2e-33
sp|P35980|RL18_MOUSE 60S ribosomal protein L18 139 2e-33
sp|P12001|RL18_RAT 60S ribosomal protein L18 139 3e-33
sp|Q07020|RL18_HUMAN 60S ribosomal protein L18 137 8e-33
sp|P42791|RL18_ARATH 60S ribosomal protein L18 128 5e-30
sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A) 123 1e-28
sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B) 123 1e-28
sp|O65729|RL18_CICAR 60S ribosomal protein L18 114 7e-26
sp|P50885|RL18_TRYBB 60S ribosomal protein L18 103 2e-22
>sp|P69091|RL18_ORENI 60S ribosomal protein L18
sp|P69090|RL18_OREMO 60S ribosomal protein L18
Length = 188
Score = 143 bits (360), Expect = 1e-34
Identities = 67/100 (67%), Positives = 83/100 (83%)
Frame = +1
Query: 1 MKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALR 180
MK PGRE+KIAVVVGTV DD+RI+++PKL +CALRVT GAR RILKAGG+++TFD+LAL
Sbjct: 70 MKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALA 129
Query: 181 TPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 300
+P G+GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 130 SPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18
Length = 188
Score = 139 bits (351), Expect = 2e-33
Identities = 65/100 (65%), Positives = 81/100 (81%)
Frame = +1
Query: 1 MKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALR 180
MK GRE+KIAVVVGT+ DD+RI +PKL +CALRVTAGAR RILKAGG+++TFD+LA+
Sbjct: 70 MKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVT 129
Query: 181 TPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 300
TP G+GTVLL GPR ++ G APG PHSHT+P++RS
Sbjct: 130 TPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRS 169
>sp|P35980|RL18_MOUSE 60S ribosomal protein L18
Length = 188
Score = 139 bits (350), Expect = 2e-33
Identities = 67/100 (67%), Positives = 82/100 (82%)
Frame = +1
Query: 1 MKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALR 180
MK PGRE+K AVVVGTV DD+RI EVPKL +CALRV++ AR+RILKAGG+I+TFD+LAL
Sbjct: 70 MKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALE 129
Query: 181 TPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 300
+P G+GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 130 SPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P12001|RL18_RAT 60S ribosomal protein L18
Length = 188
Score = 139 bits (349), Expect = 3e-33
Identities = 66/100 (66%), Positives = 82/100 (82%)
Frame = +1
Query: 1 MKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALR 180
MK PGRE+K AVVVGT+ DD+RI EVPKL +CALRV++ AR+RILKAGG+I+TFD+LAL
Sbjct: 70 MKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALE 129
Query: 181 TPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 300
+P G+GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 130 SPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|Q07020|RL18_HUMAN 60S ribosomal protein L18
Length = 188
Score = 137 bits (345), Expect = 8e-33
Identities = 65/100 (65%), Positives = 82/100 (82%)
Frame = +1
Query: 1 MKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALR 180
MK PGRE+K AVVVGT+ DD+R++EVPKL +CALRVT+ AR+RIL+AGG+I+TFD+LAL
Sbjct: 70 MKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALD 129
Query: 181 TPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 300
+P G GTVLL GPR ++ G APG PHSHT+P+VRS
Sbjct: 130 SPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P42791|RL18_ARATH 60S ribosomal protein L18
Length = 187
Score = 128 bits (321), Expect = 5e-30
Identities = 59/96 (61%), Positives = 78/96 (81%)
Frame = +1
Query: 13 GREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLG 192
G+EDKIAV+VGT+ DDLR+ E+P + + ALR T ARARI KAGGE +TFD+LALR PLG
Sbjct: 73 GKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLG 132
Query: 193 KGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 300
+ TVLL+GP++ + K+ G APGVPHSH++P+VR+
Sbjct: 133 QNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRA 168
>sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A)
Length = 188
Score = 123 bits (308), Expect = 1e-28
Identities = 58/100 (58%), Positives = 76/100 (76%)
Frame = +1
Query: 1 MKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALR 180
MK P RE+K AVVVG + D+RI ++PKLT+CAL++T+GAR+RILKAGG+I+TFD+LAL
Sbjct: 70 MKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMTFDQLALA 129
Query: 181 TPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 300
P G+ TVLL GPR ++ G AP PHS T+P+V S
Sbjct: 130 APKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLS 169
>sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B)
Length = 188
Score = 123 bits (308), Expect = 1e-28
Identities = 57/100 (57%), Positives = 76/100 (76%)
Frame = +1
Query: 1 MKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALR 180
MK GRE+K AVVVG + DD+RI ++PKL +CAL++T+G R+RILK+GG+I+TFD+LAL
Sbjct: 70 MKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMTFDQLALA 129
Query: 181 TPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 300
P G+ TVLL GPR ++ G APG PHS T+P+V S
Sbjct: 130 APKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLS 169
>sp|O65729|RL18_CICAR 60S ribosomal protein L18
Length = 183
Score = 114 bits (285), Expect = 7e-26
Identities = 57/96 (59%), Positives = 73/96 (76%)
Frame = +1
Query: 13 GREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLG 192
G+E KI VVVG V DD+R+ +VP + + AL+ T ARARI KAGGE +TFD+LALR PL
Sbjct: 70 GKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL- 128
Query: 193 KGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 300
TVLL+GP++ + K+ G APGVPHSHT+P+VRS
Sbjct: 129 TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRS 164
>sp|P50885|RL18_TRYBB 60S ribosomal protein L18
Length = 193
Score = 103 bits (256), Expect = 2e-22
Identities = 52/98 (53%), Positives = 68/98 (69%)
Frame = +1
Query: 7 KPGREDKIAVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTP 186
K G++ IAV+VG V DD+R+ +P L +CALR + AR RI AGGE +TFD+LA+ P
Sbjct: 79 KKGKKSPIAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAP 138
Query: 187 LGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRPHVRS 300
GK T+LL+G +S S K+ GAA GVP SH +PHV S
Sbjct: 139 TGKNTMLLRGRKSGRESVKHFGAA-GVPGSHAKPHVSS 175
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,234,758
Number of Sequences: 369166
Number of extensions: 628369
Number of successful extensions: 1770
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1764
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)