Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_D04
(478 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P69091|RL18_ORENI 60S ribosomal protein L18 >gi|59800182... 167 2e-41
sp|P35980|RL18_MOUSE 60S ribosomal protein L18 165 6e-41
sp|P12001|RL18_RAT 60S ribosomal protein L18 164 7e-41
sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18 164 1e-40
sp|Q07020|RL18_HUMAN 60S ribosomal protein L18 163 2e-40
sp|P42791|RL18_ARATH 60S ribosomal protein L18 151 7e-37
sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A) 149 3e-36
sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B) 149 3e-36
sp|O65729|RL18_CICAR 60S ribosomal protein L18 137 1e-32
sp|P50885|RL18_TRYBB 60S ribosomal protein L18 118 6e-27
>sp|P69091|RL18_ORENI 60S ribosomal protein L18
sp|P69090|RL18_OREMO 60S ribosomal protein L18
Length = 188
Score = 167 bits (422), Expect = 2e-41
Identities = 77/127 (60%), Positives = 104/127 (81%)
Frame = +1
Query: 13 FNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCA 192
FN ++ +RL M+R R P++++RL+++MK PGRE+KIAVVVGTV DD+RI+++PKL +CA
Sbjct: 43 FNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICA 102
Query: 193 LRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSH 372
LRVT GAR RILKAGG+++TFD+LAL +P G+GTVLL GPR ++ G APG PHSH
Sbjct: 103 LRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSH 162
Query: 373 TRPHVRS 393
T+P+VRS
Sbjct: 163 TKPYVRS 169
>sp|P35980|RL18_MOUSE 60S ribosomal protein L18
Length = 188
Score = 165 bits (417), Expect = 6e-41
Identities = 79/127 (62%), Positives = 103/127 (81%)
Frame = +1
Query: 13 FNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCA 192
FN ++ KRL M+R R PLS++R++++MK PGRE+K AVVVGTV DD+RI EVPKL +CA
Sbjct: 43 FNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCA 102
Query: 193 LRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSH 372
LRV++ AR+RILKAGG+I+TFD+LAL +P G+GTVLL GPR ++ G APG PHSH
Sbjct: 103 LRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSH 162
Query: 373 TRPHVRS 393
T+P+VRS
Sbjct: 163 TKPYVRS 169
>sp|P12001|RL18_RAT 60S ribosomal protein L18
Length = 188
Score = 164 bits (416), Expect = 7e-41
Identities = 78/127 (61%), Positives = 103/127 (81%)
Frame = +1
Query: 13 FNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCA 192
FN ++ KRL M+R R PLS++R++++MK PGRE+K AVVVGT+ DD+RI EVPKL +CA
Sbjct: 43 FNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCA 102
Query: 193 LRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSH 372
LRV++ AR+RILKAGG+I+TFD+LAL +P G+GTVLL GPR ++ G APG PHSH
Sbjct: 103 LRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSH 162
Query: 373 TRPHVRS 393
T+P+VRS
Sbjct: 163 TKPYVRS 169
>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18
Length = 188
Score = 164 bits (414), Expect = 1e-40
Identities = 76/127 (59%), Positives = 102/127 (80%)
Frame = +1
Query: 13 FNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCA 192
FN ++ KRL M++ R PL+++RL+++MK GRE+KIAVVVGT+ DD+RI +PKL +CA
Sbjct: 43 FNKVVLKRLFMSKTNRPPLALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCA 102
Query: 193 LRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSH 372
LRVTAGAR RILKAGG+++TFD+LA+ TP G+GTVLL GPR ++ G APG PHSH
Sbjct: 103 LRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSH 162
Query: 373 TRPHVRS 393
T+P++RS
Sbjct: 163 TKPYIRS 169
>sp|Q07020|RL18_HUMAN 60S ribosomal protein L18
Length = 188
Score = 163 bits (412), Expect = 2e-40
Identities = 77/127 (60%), Positives = 103/127 (81%)
Frame = +1
Query: 13 FNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCA 192
FN ++ KRL M+R R PLS++R++++MK PGRE+K AVVVGT+ DD+R++EVPKL +CA
Sbjct: 43 FNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCA 102
Query: 193 LRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSH 372
LRVT+ AR+RIL+AGG+I+TFD+LAL +P G GTVLL GPR ++ G APG PHSH
Sbjct: 103 LRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSH 162
Query: 373 TRPHVRS 393
T+P+VRS
Sbjct: 163 TKPYVRS 169
>sp|P42791|RL18_ARATH 60S ribosomal protein L18
Length = 187
Score = 151 bits (382), Expect = 7e-37
Identities = 74/128 (57%), Positives = 101/128 (78%)
Frame = +1
Query: 10 KFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLC 189
KFNG+I KRL M++ + PLS++RL++ M G+EDKIAV+VGT+ DDLR+ E+P + +
Sbjct: 43 KFNGVILKRLFMSKVNKAPLSLSRLVEFMT--GKEDKIAVLVGTITDDLRVHEIPAMKVT 100
Query: 190 ALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHS 369
ALR T ARARI KAGGE +TFD+LALR PLG+ TVLL+GP++ + K+ G APGVPHS
Sbjct: 101 ALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHS 160
Query: 370 HTRPHVRS 393
H++P+VR+
Sbjct: 161 HSKPYVRA 168
>sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A)
Length = 188
Score = 149 bits (376), Expect = 3e-36
Identities = 71/127 (55%), Positives = 97/127 (76%)
Frame = +1
Query: 13 FNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCA 192
FN ++ KRL M+R R PLS++RL+++MK P RE+K AVVVG + D+RI ++PKLT+CA
Sbjct: 43 FNRVVLKRLFMSRTNRPPLSMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCA 102
Query: 193 LRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSH 372
L++T+GAR+RILKAGG+I+TFD+LAL P G+ TVLL GPR ++ G AP PHS
Sbjct: 103 LKLTSGARSRILKAGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSR 162
Query: 373 TRPHVRS 393
T+P+V S
Sbjct: 163 TKPYVLS 169
>sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B)
Length = 188
Score = 149 bits (376), Expect = 3e-36
Identities = 70/127 (55%), Positives = 97/127 (76%)
Frame = +1
Query: 13 FNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCA 192
FN ++ KRL M+R R PLS++RL+++MK GRE+K AVVVG + DD+RI ++PKL +CA
Sbjct: 43 FNRVVLKRLFMSRTNRPPLSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCA 102
Query: 193 LRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSH 372
L++T+G R+RILK+GG+I+TFD+LAL P G+ TVLL GPR ++ G APG PHS
Sbjct: 103 LKITSGDRSRILKSGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSR 162
Query: 373 TRPHVRS 393
T+P+V S
Sbjct: 163 TKPYVLS 169
>sp|O65729|RL18_CICAR 60S ribosomal protein L18
Length = 183
Score = 137 bits (346), Expect = 1e-32
Identities = 72/127 (56%), Positives = 95/127 (74%)
Frame = +1
Query: 13 FNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCA 192
FN +I KRL M++ R PLS++RL+K M+ G+E KI VVVG V DD+R+ +VP + + A
Sbjct: 41 FNAVILKRLFMSKVNRPPLSLSRLIKYMQ--GKEGKIGVVVGAVTDDIRVYDVPTIKVTA 98
Query: 193 LRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSH 372
L+ T ARARI KAGGE +TFD+LALR PL TVLL+GP++ + K+ G APGVPHSH
Sbjct: 99 LKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSH 157
Query: 373 TRPHVRS 393
T+P+VRS
Sbjct: 158 TKPYVRS 164
>sp|P50885|RL18_TRYBB 60S ribosomal protein L18
Length = 193
Score = 118 bits (296), Expect = 6e-27
Identities = 64/133 (48%), Positives = 87/133 (65%), Gaps = 6/133 (4%)
Frame = +1
Query: 13 FNGIIAKRLAMARRLRQPLSIARLMKQMK------KPGREDKIAVVVGTVADDLRIREVP 174
FN +I KRL +R R P+S++R+ M+ K G++ IAV+VG V DD+R+ +P
Sbjct: 44 FNKLIHKRLLKSRNNRAPISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIP 103
Query: 175 KLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAP 354
L +CALR + AR RI AGGE +TFD+LA+ P GK T+LL+G +S S K+ GAA
Sbjct: 104 ALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFGAA- 162
Query: 355 GVPHSHTRPHVRS 393
GVP SH +PHV S
Sbjct: 163 GVPGSHAKPHVSS 175
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,783,865
Number of Sequences: 369166
Number of extensions: 772621
Number of successful extensions: 2147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2135
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2832714465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)