Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_A10
(351 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P69091|RL18_ORENI 60S ribosomal protein L18 >gi|59800182... 124 7e-29
sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18 124 9e-29
sp|P35980|RL18_MOUSE 60S ribosomal protein L18 122 3e-28
sp|P12001|RL18_RAT 60S ribosomal protein L18 122 3e-28
sp|Q07020|RL18_HUMAN 60S ribosomal protein L18 120 1e-27
sp|P42791|RL18_ARATH 60S ribosomal protein L18 114 7e-26
sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A) 109 2e-24
sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B) 109 2e-24
sp|O65729|RL18_CICAR 60S ribosomal protein L18 104 5e-23
sp|P50885|RL18_TRYBB 60S ribosomal protein L18 94 1e-19
>sp|P69091|RL18_ORENI 60S ribosomal protein L18
sp|P69090|RL18_OREMO 60S ribosomal protein L18
Length = 188
Score = 124 bits (311), Expect = 7e-29
Identities = 57/88 (64%), Positives = 72/88 (81%)
Frame = +3
Query: 3 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 182
VVGTV DD+RI+++PKL +CALRVT GAR RILKAGG+++TFD+LAL +P G+GTVLL G
Sbjct: 82 VVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSG 141
Query: 183 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 266
PR ++ G APG PHSHT+P+VRS
Sbjct: 142 PRKAREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18
Length = 188
Score = 124 bits (310), Expect = 9e-29
Identities = 56/88 (63%), Positives = 71/88 (80%)
Frame = +3
Query: 3 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 182
VVGT+ DD+RI +PKL +CALRVTAGAR RILKAGG+++TFD+LA+ TP G+GTVLL G
Sbjct: 82 VVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLLSG 141
Query: 183 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 266
PR ++ G APG PHSHT+P++RS
Sbjct: 142 PRKAREVYRHFGKAPGTPHSHTKPYIRS 169
>sp|P35980|RL18_MOUSE 60S ribosomal protein L18
Length = 188
Score = 122 bits (306), Expect = 3e-28
Identities = 58/88 (65%), Positives = 72/88 (81%)
Frame = +3
Query: 3 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 182
VVGTV DD+RI EVPKL +CALRV++ AR+RILKAGG+I+TFD+LAL +P G+GTVLL G
Sbjct: 82 VVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSG 141
Query: 183 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 266
PR ++ G APG PHSHT+P+VRS
Sbjct: 142 PRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P12001|RL18_RAT 60S ribosomal protein L18
Length = 188
Score = 122 bits (305), Expect = 3e-28
Identities = 57/88 (64%), Positives = 72/88 (81%)
Frame = +3
Query: 3 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 182
VVGT+ DD+RI EVPKL +CALRV++ AR+RILKAGG+I+TFD+LAL +P G+GTVLL G
Sbjct: 82 VVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSG 141
Query: 183 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 266
PR ++ G APG PHSHT+P+VRS
Sbjct: 142 PRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|Q07020|RL18_HUMAN 60S ribosomal protein L18
Length = 188
Score = 120 bits (301), Expect = 1e-27
Identities = 56/88 (63%), Positives = 72/88 (81%)
Frame = +3
Query: 3 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 182
VVGT+ DD+R++EVPKL +CALRVT+ AR+RIL+AGG+I+TFD+LAL +P G GTVLL G
Sbjct: 82 VVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSG 141
Query: 183 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 266
PR ++ G APG PHSHT+P+VRS
Sbjct: 142 PRKGREVYRHFGKAPGTPHSHTKPYVRS 169
>sp|P42791|RL18_ARATH 60S ribosomal protein L18
Length = 187
Score = 114 bits (285), Expect = 7e-26
Identities = 52/88 (59%), Positives = 70/88 (79%)
Frame = +3
Query: 3 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 182
+VGT+ DDLR+ E+P + + ALR T ARARI KAGGE +TFD+LALR PLG+ TVLL+G
Sbjct: 81 LVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRG 140
Query: 183 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 266
P++ + K+ G APGVPHSH++P+VR+
Sbjct: 141 PKNSREAVKHFGPAPGVPHSHSKPYVRA 168
>sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A)
Length = 188
Score = 109 bits (272), Expect = 2e-24
Identities = 50/88 (56%), Positives = 67/88 (76%)
Frame = +3
Query: 3 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 182
VVG + D+RI ++PKLT+CAL++T+GAR+RILKAGG+I+TFD+LAL P G+ TVLL G
Sbjct: 82 VVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMTFDQLALAAPKGQNTVLLSG 141
Query: 183 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 266
PR ++ G AP PHS T+P+V S
Sbjct: 142 PRKAREVYRHFGKAPSTPHSRTKPYVLS 169
>sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B)
Length = 188
Score = 109 bits (272), Expect = 2e-24
Identities = 49/88 (55%), Positives = 67/88 (76%)
Frame = +3
Query: 3 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 182
VVG + DD+RI ++PKL +CAL++T+G R+RILK+GG+I+TFD+LAL P G+ TVLL G
Sbjct: 82 VVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMTFDQLALAAPKGQNTVLLSG 141
Query: 183 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 266
PR ++ G APG PHS T+P+V S
Sbjct: 142 PRKAREVYRHFGKAPGTPHSRTKPYVLS 169
>sp|O65729|RL18_CICAR 60S ribosomal protein L18
Length = 183
Score = 104 bits (260), Expect = 5e-23
Identities = 52/88 (59%), Positives = 67/88 (76%)
Frame = +3
Query: 3 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 182
VVG V DD+R+ +VP + + AL+ T ARARI KAGGE +TFD+LALR PL TVLL+G
Sbjct: 78 VVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRG 136
Query: 183 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 266
P++ + K+ G APGVPHSHT+P+VRS
Sbjct: 137 PKNAREAVKHFGPAPGVPHSHTKPYVRS 164
>sp|P50885|RL18_TRYBB 60S ribosomal protein L18
Length = 193
Score = 94.0 bits (232), Expect = 1e-19
Identities = 47/88 (53%), Positives = 61/88 (69%)
Frame = +3
Query: 3 VVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQG 182
+VG V DD+R+ +P L +CALR + AR RI AGGE +TFD+LA+ P GK T+LL+G
Sbjct: 89 IVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLLRG 148
Query: 183 PRSQTTSQKYMGAAPGVPHSHTRPHVRS 266
+S S K+ GAA GVP SH +PHV S
Sbjct: 149 RKSGRESVKHFGAA-GVPGSHAKPHVSS 175
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,648,259
Number of Sequences: 369166
Number of extensions: 597899
Number of successful extensions: 1585
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1580
length of database: 68,354,980
effective HSP length: 84
effective length of database: 52,837,240
effective search space used: 1690791680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)