Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_M15
(460 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P69091|RL18_ORENI 60S ribosomal protein L18 >gi|59800182... 163 2e-40
sp|P35980|RL18_MOUSE 60S ribosomal protein L18 161 7e-40
sp|P12001|RL18_RAT 60S ribosomal protein L18 160 1e-39
sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18 160 2e-39
sp|Q07020|RL18_HUMAN 60S ribosomal protein L18 159 3e-39
sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A) 145 4e-35
sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B) 145 4e-35
sp|P42791|RL18_ARATH 60S ribosomal protein L18 145 5e-35
sp|O65729|RL18_CICAR 60S ribosomal protein L18 133 2e-31
sp|P50885|RL18_TRYBB 60S ribosomal protein L18 114 8e-26
>sp|P69091|RL18_ORENI 60S ribosomal protein L18
sp|P69090|RL18_OREMO 60S ribosomal protein L18
Length = 188
Score = 163 bits (412), Expect = 2e-40
Identities = 75/124 (60%), Positives = 102/124 (82%)
Frame = +1
Query: 4 IIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRV 183
++ +RL M+R R P++++RL+++MK PGRE+KIAVVVGTV DD+RI+++PKL +CALRV
Sbjct: 46 VVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRV 105
Query: 184 TAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRP 363
T GAR RILKAGG+++TFD+LAL +P G+GTVLL GPR ++ G APG PHSHT+P
Sbjct: 106 TDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKP 165
Query: 364 HVRS 375
+VRS
Sbjct: 166 YVRS 169
>sp|P35980|RL18_MOUSE 60S ribosomal protein L18
Length = 188
Score = 161 bits (407), Expect = 7e-40
Identities = 77/124 (62%), Positives = 101/124 (81%)
Frame = +1
Query: 4 IIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRV 183
++ KRL M+R R PLS++R++++MK PGRE+K AVVVGTV DD+RI EVPKL +CALRV
Sbjct: 46 VVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRV 105
Query: 184 TAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRP 363
++ AR+RILKAGG+I+TFD+LAL +P G+GTVLL GPR ++ G APG PHSHT+P
Sbjct: 106 SSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKP 165
Query: 364 HVRS 375
+VRS
Sbjct: 166 YVRS 169
>sp|P12001|RL18_RAT 60S ribosomal protein L18
Length = 188
Score = 160 bits (406), Expect = 1e-39
Identities = 76/124 (61%), Positives = 101/124 (81%)
Frame = +1
Query: 4 IIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRV 183
++ KRL M+R R PLS++R++++MK PGRE+K AVVVGT+ DD+RI EVPKL +CALRV
Sbjct: 46 VVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRV 105
Query: 184 TAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRP 363
++ AR+RILKAGG+I+TFD+LAL +P G+GTVLL GPR ++ G APG PHSHT+P
Sbjct: 106 SSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKP 165
Query: 364 HVRS 375
+VRS
Sbjct: 166 YVRS 169
>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18
Length = 188
Score = 160 bits (404), Expect = 2e-39
Identities = 74/124 (59%), Positives = 100/124 (80%)
Frame = +1
Query: 4 IIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRV 183
++ KRL M++ R PL+++RL+++MK GRE+KIAVVVGT+ DD+RI +PKL +CALRV
Sbjct: 46 VVLKRLFMSKTNRPPLALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRV 105
Query: 184 TAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRP 363
TAGAR RILKAGG+++TFD+LA+ TP G+GTVLL GPR ++ G APG PHSHT+P
Sbjct: 106 TAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKP 165
Query: 364 HVRS 375
++RS
Sbjct: 166 YIRS 169
>sp|Q07020|RL18_HUMAN 60S ribosomal protein L18
Length = 188
Score = 159 bits (402), Expect = 3e-39
Identities = 75/124 (60%), Positives = 101/124 (81%)
Frame = +1
Query: 4 IIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRV 183
++ KRL M+R R PLS++R++++MK PGRE+K AVVVGT+ DD+R++EVPKL +CALRV
Sbjct: 46 VVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRV 105
Query: 184 TAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRP 363
T+ AR+RIL+AGG+I+TFD+LAL +P G GTVLL GPR ++ G APG PHSHT+P
Sbjct: 106 TSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKP 165
Query: 364 HVRS 375
+VRS
Sbjct: 166 YVRS 169
>sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A)
Length = 188
Score = 145 bits (366), Expect = 4e-35
Identities = 69/124 (55%), Positives = 95/124 (76%)
Frame = +1
Query: 4 IIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRV 183
++ KRL M+R R PLS++RL+++MK P RE+K AVVVG + D+RI ++PKLT+CAL++
Sbjct: 46 VVLKRLFMSRTNRPPLSMSRLIRKMKLPRRENKTAVVVGCITADVRIHDIPKLTVCALKL 105
Query: 184 TAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRP 363
T+GAR+RILKAGG+I+TFD+LAL P G+ TVLL GPR ++ G AP PHS T+P
Sbjct: 106 TSGARSRILKAGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPSTPHSRTKP 165
Query: 364 HVRS 375
+V S
Sbjct: 166 YVLS 169
>sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B)
Length = 188
Score = 145 bits (366), Expect = 4e-35
Identities = 68/124 (54%), Positives = 95/124 (76%)
Frame = +1
Query: 4 IIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRV 183
++ KRL M+R R PLS++RL+++MK GRE+K AVVVG + DD+RI ++PKL +CAL++
Sbjct: 46 VVLKRLFMSRTNRPPLSMSRLIRKMKLQGRENKTAVVVGYITDDVRIHDIPKLKVCALKI 105
Query: 184 TAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRP 363
T+G R+RILK+GG+I+TFD+LAL P G+ TVLL GPR ++ G APG PHS T+P
Sbjct: 106 TSGDRSRILKSGGQIMTFDQLALAAPKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKP 165
Query: 364 HVRS 375
+V S
Sbjct: 166 YVLS 169
>sp|P42791|RL18_ARATH 60S ribosomal protein L18
Length = 187
Score = 145 bits (365), Expect = 5e-35
Identities = 71/125 (56%), Positives = 98/125 (78%)
Frame = +1
Query: 1 GIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALR 180
G+I KRL M++ + PLS++RL++ M G+EDKIAV+VGT+ DDLR+ E+P + + ALR
Sbjct: 46 GVILKRLFMSKVNKAPLSLSRLVEFMT--GKEDKIAVLVGTITDDLRVHEIPAMKVTALR 103
Query: 181 VTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTR 360
T ARARI KAGGE +TFD+LALR PLG+ TVLL+GP++ + K+ G APGVPHSH++
Sbjct: 104 FTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSK 163
Query: 361 PHVRS 375
P+VR+
Sbjct: 164 PYVRA 168
>sp|O65729|RL18_CICAR 60S ribosomal protein L18
Length = 183
Score = 133 bits (334), Expect = 2e-31
Identities = 70/124 (56%), Positives = 93/124 (75%)
Frame = +1
Query: 4 IIAKRLAMARRLRQPLSIARLMKQMKKPGREDKIAVVVGTVADDLRIREVPKLTLCALRV 183
+I KRL M++ R PLS++RL+K M+ G+E KI VVVG V DD+R+ +VP + + AL+
Sbjct: 44 VILKRLFMSKVNRPPLSLSRLIKYMQ--GKEGKIGVVVGAVTDDIRVYDVPTIKVTALKF 101
Query: 184 TAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVPHSHTRP 363
T ARARI KAGGE +TFD+LALR PL TVLL+GP++ + K+ G APGVPHSHT+P
Sbjct: 102 TETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKP 160
Query: 364 HVRS 375
+VRS
Sbjct: 161 YVRS 164
>sp|P50885|RL18_TRYBB 60S ribosomal protein L18
Length = 193
Score = 114 bits (286), Expect = 8e-26
Identities = 62/130 (47%), Positives = 85/130 (65%), Gaps = 6/130 (4%)
Frame = +1
Query: 4 IIAKRLAMARRLRQPLSIARLMKQMK------KPGREDKIAVVVGTVADDLRIREVPKLT 165
+I KRL +R R P+S++R+ M+ K G++ IAV+VG V DD+R+ +P L
Sbjct: 47 LIHKRLLKSRNNRAPISLSRIAVCMRRRTVWLKKGKKSPIAVIVGDVLDDVRMTRIPALR 106
Query: 166 LCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLLQGPRSQTTSQKYMGAAPGVP 345
+CALR + AR RI AGGE +TFD+LA+ P GK T+LL+G +S S K+ GAA GVP
Sbjct: 107 ICALRFSKSARERITGAGGECLTFDQLAMMAPTGKNTMLLRGRKSGRESVKHFGAA-GVP 165
Query: 346 HSHTRPHVRS 375
SH +PHV S
Sbjct: 166 GSHAKPHVSS 175
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,671,371
Number of Sequences: 369166
Number of extensions: 735576
Number of successful extensions: 2086
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2076
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2534533995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)