Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_H23
(538 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35980|RL18_MOUSE 60S ribosomal protein L18 213 2e-55
sp|P12001|RL18_RAT 60S ribosomal protein L18 213 3e-55
sp|Q07020|RL18_HUMAN 60S ribosomal protein L18 211 9e-55
sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18 211 1e-54
sp|P69091|RL18_ORENI 60S ribosomal protein L18 >gi|59800182... 210 2e-54
sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A) 197 1e-50
sp|P42791|RL18_ARATH 60S ribosomal protein L18 197 1e-50
sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B) 197 1e-50
sp|O65729|RL18_CICAR 60S ribosomal protein L18 186 2e-47
sp|P07279|RL18_YEAST 60S ribosomal protein L18 (RP28) 159 5e-39
>sp|P35980|RL18_MOUSE 60S ribosomal protein L18
Length = 188
Score = 213 bits (542), Expect = 2e-55
Identities = 104/166 (62%), Positives = 132/166 (79%)
Frame = +2
Query: 2 SNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKI 181
S D Y RL KL+ +L R+T FN ++ KRL M+R R PLS++R++++MK PGRE+K
Sbjct: 20 SQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKT 79
Query: 182 AVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLL 361
AVVVGTV DD+RI EVPKL +CALRV++ AR+RILKAGG+I+TFD+LAL +P G+GTVLL
Sbjct: 80 AVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLL 139
Query: 362 QGPRSQTTSQKYMGAAPGVPHSHTRPHVRSKGRKFERARGRRSSRG 499
GPR ++ G APG PHSHT+P+VRSKGRKFERARGRR+SRG
Sbjct: 140 SGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRG 185
>sp|P12001|RL18_RAT 60S ribosomal protein L18
Length = 188
Score = 213 bits (541), Expect = 3e-55
Identities = 103/166 (62%), Positives = 132/166 (79%)
Frame = +2
Query: 2 SNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKI 181
S D Y RL KL+ +L R+T FN ++ KRL M+R R PLS++R++++MK PGRE+K
Sbjct: 20 SQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKT 79
Query: 182 AVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLL 361
AVVVGT+ DD+RI EVPKL +CALRV++ AR+RILKAGG+I+TFD+LAL +P G+GTVLL
Sbjct: 80 AVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLL 139
Query: 362 QGPRSQTTSQKYMGAAPGVPHSHTRPHVRSKGRKFERARGRRSSRG 499
GPR ++ G APG PHSHT+P+VRSKGRKFERARGRR+SRG
Sbjct: 140 SGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRG 185
>sp|Q07020|RL18_HUMAN 60S ribosomal protein L18
Length = 188
Score = 211 bits (537), Expect = 9e-55
Identities = 102/166 (61%), Positives = 132/166 (79%)
Frame = +2
Query: 2 SNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKI 181
S D Y RL KL+ +L R+T FN ++ KRL M+R R PLS++R++++MK PGRE+K
Sbjct: 20 SQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKT 79
Query: 182 AVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLL 361
AVVVGT+ DD+R++EVPKL +CALRVT+ AR+RIL+AGG+I+TFD+LAL +P G GTVLL
Sbjct: 80 AVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLL 139
Query: 362 QGPRSQTTSQKYMGAAPGVPHSHTRPHVRSKGRKFERARGRRSSRG 499
GPR ++ G APG PHSHT+P+VRSKGRKFERARGRR+SRG
Sbjct: 140 SGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRG 185
>sp|Q90YV0|RL18_ICTPU 60S ribosomal protein L18
Length = 188
Score = 211 bits (536), Expect = 1e-54
Identities = 100/166 (60%), Positives = 132/166 (79%)
Frame = +2
Query: 2 SNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKI 181
S D Y RL KL+ +L R+++ FN ++ KRL M++ R PL+++RL+++MK GRE+KI
Sbjct: 20 SQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPPLALSRLIRKMKLQGRENKI 79
Query: 182 AVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLL 361
AVVVGT+ DD+RI +PKL +CALRVTAGAR RILKAGG+++TFD+LA+ TP G+GTVLL
Sbjct: 80 AVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLL 139
Query: 362 QGPRSQTTSQKYMGAAPGVPHSHTRPHVRSKGRKFERARGRRSSRG 499
GPR ++ G APG PHSHT+P++RSKGRKFERARGRR+SRG
Sbjct: 140 SGPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFERARGRRASRG 185
>sp|P69091|RL18_ORENI 60S ribosomal protein L18
sp|P69090|RL18_OREMO 60S ribosomal protein L18
Length = 188
Score = 210 bits (534), Expect = 2e-54
Identities = 100/166 (60%), Positives = 132/166 (79%)
Frame = +2
Query: 2 SNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKI 181
S D Y RL KL+ +L R++ FN ++ +RL M+R R P++++RL+++MK PGRE+KI
Sbjct: 20 SQDIYLRLLVKLYRFLARRSNAPFNRVVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKI 79
Query: 182 AVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLL 361
AVVVGTV DD+RI+++PKL +CALRVT GAR RILKAGG+++TFD+LAL +P G+GTVLL
Sbjct: 80 AVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLL 139
Query: 362 QGPRSQTTSQKYMGAAPGVPHSHTRPHVRSKGRKFERARGRRSSRG 499
GPR ++ G APG PHSHT+P+VRSKGRKFERARGRR+S G
Sbjct: 140 SGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCG 185
>sp|P09897|RL18A_XENLA 60S ribosomal protein L18-A (L14A)
Length = 188
Score = 197 bits (502), Expect = 1e-50
Identities = 96/166 (57%), Positives = 126/166 (75%)
Frame = +2
Query: 2 SNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKI 181
S D Y RL KL+ +L R+T FN ++ KRL M+R R PLS++RL+++MK P RE+K
Sbjct: 20 SQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLPRRENKT 79
Query: 182 AVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLL 361
AVVVG + D+RI ++PKLT+CAL++T+GAR+RILKAGG+I+TFD+LAL P G+ TVLL
Sbjct: 80 AVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMTFDQLALAAPKGQNTVLL 139
Query: 362 QGPRSQTTSQKYMGAAPGVPHSHTRPHVRSKGRKFERARGRRSSRG 499
GPR ++ G AP PHS T+P+V SKGRKFERARGRR+SRG
Sbjct: 140 SGPRKAREVYRHFGKAPSTPHSRTKPYVLSKGRKFERARGRRASRG 185
>sp|P42791|RL18_ARATH 60S ribosomal protein L18
Length = 187
Score = 197 bits (502), Expect = 1e-50
Identities = 96/168 (57%), Positives = 132/168 (78%)
Frame = +2
Query: 2 SNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKI 181
S+D Y +L+ KL+ +L R+T KFNG+I KRL M++ + PLS++RL++ M G+EDKI
Sbjct: 21 SDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMT--GKEDKI 78
Query: 182 AVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLL 361
AV+VGT+ DDLR+ E+P + + ALR T ARARI KAGGE +TFD+LALR PLG+ TVLL
Sbjct: 79 AVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLL 138
Query: 362 QGPRSQTTSQKYMGAAPGVPHSHTRPHVRSKGRKFERARGRRSSRGLQ 505
+GP++ + K+ G APGVPHSH++P+VR+KGRKFE+ARG+R SRG +
Sbjct: 139 RGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFK 186
>sp|P02412|RL18B_XENLA 60S ribosomal protein L18B (L14B)
Length = 188
Score = 197 bits (502), Expect = 1e-50
Identities = 95/166 (57%), Positives = 126/166 (75%)
Frame = +2
Query: 2 SNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKI 181
S D Y RL KL+ +L R+T FN ++ KRL M+R R PLS++RL+++MK GRE+K
Sbjct: 20 SQDIYLRLLVKLYRFLARRTNSSFNRVVLKRLFMSRTNRPPLSMSRLIRKMKLQGRENKT 79
Query: 182 AVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLL 361
AVVVG + DD+RI ++PKL +CAL++T+G R+RILK+GG+I+TFD+LAL P G+ TVLL
Sbjct: 80 AVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMTFDQLALAAPKGQNTVLL 139
Query: 362 QGPRSQTTSQKYMGAAPGVPHSHTRPHVRSKGRKFERARGRRSSRG 499
GPR ++ G APG PHS T+P+V SKGRKFERARGRR+SRG
Sbjct: 140 SGPRKAREVYRHFGKAPGTPHSRTKPYVLSKGRKFERARGRRASRG 185
>sp|O65729|RL18_CICAR 60S ribosomal protein L18
Length = 183
Score = 186 bits (473), Expect = 2e-47
Identities = 96/168 (57%), Positives = 126/168 (75%)
Frame = +2
Query: 2 SNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKI 181
SND Y +L KL+ +L R+T+ FN +I KRL M++ R PLS++RL+K M+ G+E KI
Sbjct: 18 SNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQ--GKEGKI 75
Query: 182 AVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLL 361
VVVG V DD+R+ +VP + + AL+ T ARARI KAGGE +TFD+LALR PL TVLL
Sbjct: 76 GVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLL 134
Query: 362 QGPRSQTTSQKYMGAAPGVPHSHTRPHVRSKGRKFERARGRRSSRGLQ 505
+GP++ + K+ G APGVPHSHT+P+VRSKGRKFE+ARGRR SRG +
Sbjct: 135 RGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFR 182
>sp|P07279|RL18_YEAST 60S ribosomal protein L18 (RP28)
Length = 186
Score = 159 bits (401), Expect = 5e-39
Identities = 79/168 (47%), Positives = 116/168 (69%)
Frame = +2
Query: 2 SNDSYTRLSFKLFSYLHRKTEKKFNGIIAKRLAMARRLRQPLSIARLMKQMKKPGREDKI 181
S++ Y +L KL+++L R+T+ FN ++ K L +++ R P+S++R+ + +K+ G +K
Sbjct: 21 SDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKT 80
Query: 182 AVVVGTVADDLRIREVPKLTLCALRVTAGARARILKAGGEIITFDELALRTPLGKGTVLL 361
VVVGTV DD RI E PK T+ ALR TAGARA+I+KAGGE IT D+LA+R P G+ T++L
Sbjct: 81 VVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLIL 140
Query: 362 QGPRSQTTSQKYMGAAPGVPHSHTRPHVRSKGRKFERARGRRSSRGLQ 505
+GPR+ + ++ G PH P + S GRKFERARGRR S+G +
Sbjct: 141 RGPRNSREAVRHFGMG---PHKGKAPRILSTGRKFERARGRRRSKGFK 185
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,763,075
Number of Sequences: 369166
Number of extensions: 937931
Number of successful extensions: 2695
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2681
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)