Planaria EST Database

DrC_00162

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00162
         (332 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O17307|RL37A_SCHMA  60S ribosomal protein L37a                 136   1e-32
sp|P32046|RL37A_CHICK  60S ribosomal protein L37a                 135   2e-32
sp|Q7SZB4|RL37A_XENLA  60S ribosomal protein L37a                 135   3e-32
sp|Q751L1|RL43_ASHGO  60S ribosomal protein L43                   135   3e-32
sp|P61513|RL37A_HUMAN  60S ribosomal protein L37a >gi|476064...   134   5e-32
sp|O61462|RL37A_CRYST  60S ribosomal protein L37a                 133   1e-31
sp|Q90YT0|RL37A_ICTPU  60S ribosomal protein L37a                 133   1e-31
sp|P49631|RL43_YEAST  60S ribosomal protein L43 (L37A) (YL35)     131   6e-31
sp|Q6FRG6|RL43_CANGA  60S ribosomal protein L43                   129   2e-30
sp|P43209|RL37A_BRARA  60S ribosomal protein L37a                 129   2e-30

>sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a
          Length = 91

 Score =  136 bits (343), Expect = 1e-32
 Identities = 63/86 (73%), Positives = 70/86 (81%)
 Frame = +3

Query: 39  KRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 218
           KRTKKVGIVGKYG RYG+S+RK IKKIEI  HAKY+CNFCGK +LKRK  GIW CK CKK
Sbjct: 2   KRTKKVGIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKK 61

Query: 219 VIAGGAYTHITTAAVTARAHIRRVNE 296
           V+AGGAY   TTAA T RA IRR+ +
Sbjct: 62  VVAGGAYVCSTTAATTIRAAIRRLRD 87

>sp|P32046|RL37A_CHICK 60S ribosomal protein L37a
          Length = 92

 Score =  135 bits (341), Expect = 2e-32
 Identities = 61/88 (69%), Positives = 73/88 (82%)
 Frame = +3

Query: 33  MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
           MAKRTKKVGIVGKYGTRYG+S+RK +KKIEI  HAKY C+FCGK  +KRK VGIWHC  C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSC 60

Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
            K +AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 61  MKTVAGGAWTYNTTSAVTVKSAIRRLKE 88

>sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a
          Length = 92

 Score =  135 bits (340), Expect = 3e-32
 Identities = 60/88 (68%), Positives = 74/88 (84%)
 Frame = +3

Query: 33  MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
           MAKRTKKVGIVGKYGTR+G+S+RK +KKIEI  HAKY C+FCGK  +KRK VGIWHC  C
Sbjct: 1   MAKRTKKVGIVGKYGTRFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSC 60

Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
            K++AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 61  MKIVAGGAWTYNTTSAVTVKSAIRRLKE 88

>sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43
          Length = 92

 Score =  135 bits (340), Expect = 3e-32
 Identities = 59/88 (67%), Positives = 71/88 (80%)
 Frame = +3

Query: 33  MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
           MAKRTKKVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKKA+KR   GIW+C  C
Sbjct: 1   MAKRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSC 60

Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
           KK +AGGAYT  T AA T R+ IRR+ E
Sbjct: 61  KKTVAGGAYTFSTAAAATVRSTIRRLRE 88

>sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a
 sp|P61515|RL37A_RAT 60S ribosomal protein L37a
 sp|P61514|RL37A_MOUSE 60S ribosomal protein L37a
          Length = 92

 Score =  134 bits (338), Expect = 5e-32
 Identities = 60/88 (68%), Positives = 73/88 (82%)
 Frame = +3

Query: 33  MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
           MAKRTKKVGIVGKYGTRYG+S+RK +KKIEI  HAKY C+FCGK  +KR+ VGIWHC  C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60

Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
            K +AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 61  MKTVAGGAWTYNTTSAVTVKSAIRRLKE 88

>sp|O61462|RL37A_CRYST 60S ribosomal protein L37a
          Length = 92

 Score =  133 bits (335), Expect = 1e-31
 Identities = 59/88 (67%), Positives = 73/88 (82%)
 Frame = +3

Query: 33  MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
           MAKRTKKVGIVGKYGTRYG+S+RK +KK+EI  H+KY C FCGK A+KR+ VGIW CK C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSC 60

Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
           +KV+AGGA+ + T AAVT R+ +RR+ E
Sbjct: 61  RKVVAGGAWVYSTMAAVTVRSAVRRLRE 88

>sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a
          Length = 92

 Score =  133 bits (335), Expect = 1e-31
 Identities = 59/88 (67%), Positives = 73/88 (82%)
 Frame = +3

Query: 33  MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
           MAKRTKKVGIVGKYGTRYG+S+RK +KKIEI  HAKY C+FCGK  +KR+ VGIWHC  C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60

Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
            K +AGGA+T+ TT+AVT ++ I+R+ E
Sbjct: 61  MKTVAGGAWTYNTTSAVTVKSAIKRLKE 88

>sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35)
          Length = 92

 Score =  131 bits (329), Expect = 6e-31
 Identities = 59/88 (67%), Positives = 69/88 (78%)
 Frame = +3

Query: 33  MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
           MAKRTKKVGI GKYG RYGSS+R+ +KK+EIQ HA+YDC+FCGKK +KR   GIW C  C
Sbjct: 1   MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCC 60

Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
           KK +AGGAYT  T AA T R+ IRR+ E
Sbjct: 61  KKTVAGGAYTVSTAAAATVRSTIRRLRE 88

>sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43
          Length = 92

 Score =  129 bits (325), Expect = 2e-30
 Identities = 56/88 (63%), Positives = 69/88 (78%)
 Frame = +3

Query: 33  MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
           MAKRTKKVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKK ++R   GIW C  C
Sbjct: 1   MAKRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSC 60

Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
           KK +AGGAYT  T AA T R+ IRR+ +
Sbjct: 61  KKTVAGGAYTVSTAAAATVRSTIRRLRD 88

>sp|P43209|RL37A_BRARA 60S ribosomal protein L37a
          Length = 93

 Score =  129 bits (325), Expect = 2e-30
 Identities = 63/89 (70%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
 Frame = +3

Query: 33  MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
           MAKRTKKVGIVGKYGTRYG+SIRK IKK+E+  H+KY C FCGK  +KRK VGIW CK C
Sbjct: 1   MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 213 KKVIAGGAYTHITTAAVTARAH-IRRVNE 296
            KV AGGAYT  T +AVT R+H IRR+ E
Sbjct: 61  GKVKAGGAYTMNTASAVTVRSHTIRRLRE 89

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,608,326
Number of Sequences: 369166
Number of extensions: 555491
Number of successful extensions: 1985
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1976
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1726260800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00162

  1. Dr_sW_023_B24
  2. Dr_sW_005_A06
  3. Dr_sW_006_G22
  4. Dr_sW_015_O16
  5. Dr_sW_017_L02
  6. Dr_sW_021_G03
  7. Dr_sW_022_I19
  8. Dr_sW_023_O11
  9. Dr_sW_025_L09
  10. Dr_sW_017_M09
  11. Dr_sW_020_I12
  12. Dr_sW_007_C08
  13. Dr_sW_021_J18
  14. Dr_sW_005_H21
  15. Dr_sW_028_I10
  16. Dr_sW_024_P09
  17. Dr_sW_025_D03
  18. Dr_sW_022_E06
  19. Dr_sW_027_B01
  20. Dr_sW_002_E17
  21. Dr_sW_003_F20
  22. Dr_sW_002_J20