Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_G03
(252 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a 110 8e-25
sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43 107 6e-24
sp|P32046|RL37A_CHICK 60S ribosomal protein L37a 104 5e-23
sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a 104 7e-23
sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a >gi|476064... 103 1e-22
sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35) 103 1e-22
sp|O61462|RL37A_CRYST 60S ribosomal protein L37a 102 3e-22
sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a 102 3e-22
sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43 102 4e-22
sp|Q9Y0H7|RL37A_MYXGL 60S ribosomal protein L37a 100 1e-21
>sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a
Length = 91
Score = 110 bits (276), Expect = 8e-25
Identities = 50/72 (69%), Positives = 57/72 (79%)
Frame = +1
Query: 1 RYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAA 180
RYG+S+RK IKKIEI HAKY+CNFCGK +LKRK GIW CK CKKV+AGGAY TTAA
Sbjct: 16 RYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKKVVAGGAYVCSTTAA 75
Query: 181 VTARAHIRRVNE 216
T RA IRR+ +
Sbjct: 76 TTIRAAIRRLRD 87
>sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43
Length = 92
Score = 107 bits (268), Expect = 6e-24
Identities = 45/72 (62%), Positives = 57/72 (79%)
Frame = +1
Query: 1 RYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAA 180
RYGSS+R+ +KK+E+Q HA+YDC+FCGKKA+KR GIW+C CKK +AGGAYT T AA
Sbjct: 17 RYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKKTVAGGAYTFSTAAA 76
Query: 181 VTARAHIRRVNE 216
T R+ IRR+ E
Sbjct: 77 ATVRSTIRRLRE 88
>sp|P32046|RL37A_CHICK 60S ribosomal protein L37a
Length = 92
Score = 104 bits (260), Expect = 5e-23
Identities = 45/72 (62%), Positives = 57/72 (79%)
Frame = +1
Query: 1 RYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAA 180
RYG+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K +AGGA+T+ TT+A
Sbjct: 17 RYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKTVAGGAWTYNTTSA 76
Query: 181 VTARAHIRRVNE 216
VT ++ IRR+ E
Sbjct: 77 VTVKSAIRRLKE 88
>sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a
Length = 92
Score = 104 bits (259), Expect = 7e-23
Identities = 44/72 (61%), Positives = 58/72 (80%)
Frame = +1
Query: 1 RYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAA 180
R+G+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K++AGGA+T+ TT+A
Sbjct: 17 RFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKIVAGGAWTYNTTSA 76
Query: 181 VTARAHIRRVNE 216
VT ++ IRR+ E
Sbjct: 77 VTVKSAIRRLKE 88
>sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a
sp|P61515|RL37A_RAT 60S ribosomal protein L37a
sp|P61514|RL37A_MOUSE 60S ribosomal protein L37a
Length = 92
Score = 103 bits (257), Expect = 1e-22
Identities = 44/72 (61%), Positives = 57/72 (79%)
Frame = +1
Query: 1 RYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAA 180
RYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K +AGGA+T+ TT+A
Sbjct: 17 RYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSA 76
Query: 181 VTARAHIRRVNE 216
VT ++ IRR+ E
Sbjct: 77 VTVKSAIRRLKE 88
>sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35)
Length = 92
Score = 103 bits (257), Expect = 1e-22
Identities = 45/72 (62%), Positives = 55/72 (76%)
Frame = +1
Query: 1 RYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAA 180
RYGSS+R+ +KK+EIQ HA+YDC+FCGKK +KR GIW C CKK +AGGAYT T AA
Sbjct: 17 RYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAA 76
Query: 181 VTARAHIRRVNE 216
T R+ IRR+ E
Sbjct: 77 ATVRSTIRRLRE 88
>sp|O61462|RL37A_CRYST 60S ribosomal protein L37a
Length = 92
Score = 102 bits (254), Expect = 3e-22
Identities = 43/72 (59%), Positives = 57/72 (79%)
Frame = +1
Query: 1 RYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAA 180
RYG+S+RK +KK+EI H+KY C FCGK A+KR+ VGIW CK C+KV+AGGA+ + T AA
Sbjct: 17 RYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGGAWVYSTMAA 76
Query: 181 VTARAHIRRVNE 216
VT R+ +RR+ E
Sbjct: 77 VTVRSAVRRLRE 88
>sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a
Length = 92
Score = 102 bits (254), Expect = 3e-22
Identities = 43/72 (59%), Positives = 57/72 (79%)
Frame = +1
Query: 1 RYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAA 180
RYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K +AGGA+T+ TT+A
Sbjct: 17 RYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSA 76
Query: 181 VTARAHIRRVNE 216
VT ++ I+R+ E
Sbjct: 77 VTVKSAIKRLKE 88
>sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43
Length = 92
Score = 102 bits (253), Expect = 4e-22
Identities = 42/72 (58%), Positives = 55/72 (76%)
Frame = +1
Query: 1 RYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAA 180
RYGSS+R+ +KK+E+Q HA+YDC+FCGKK ++R GIW C CKK +AGGAYT T AA
Sbjct: 17 RYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSCKKTVAGGAYTVSTAAA 76
Query: 181 VTARAHIRRVNE 216
T R+ IRR+ +
Sbjct: 77 ATVRSTIRRLRD 88
>sp|Q9Y0H7|RL37A_MYXGL 60S ribosomal protein L37a
Length = 85
Score = 100 bits (248), Expect = 1e-21
Identities = 42/72 (58%), Positives = 56/72 (77%)
Frame = +1
Query: 1 RYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAA 180
RYG+S+RK +KKIEI H+KY C FCGK +KR+ VGIWHC C K +AGGA+T+ T++A
Sbjct: 10 RYGASLRKMVKKIEITQHSKYTCTFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTSSA 69
Query: 181 VTARAHIRRVNE 216
VT ++ IRR+ E
Sbjct: 70 VTVKSAIRRLRE 81
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,757,781
Number of Sequences: 369166
Number of extensions: 360655
Number of successful extensions: 1325
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)