Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_E06
(289 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a 132 2e-31
sp|P32046|RL37A_CHICK 60S ribosomal protein L37a 128 4e-30
sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a 128 5e-30
sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43 128 5e-30
sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a >gi|476064... 127 8e-30
sp|O61462|RL37A_CRYST 60S ribosomal protein L37a 126 2e-29
sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a 126 2e-29
sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35) 124 9e-29
sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43 122 3e-28
sp|P43209|RL37A_BRARA 60S ribosomal protein L37a 122 3e-28
>sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a
Length = 91
Score = 132 bits (333), Expect = 2e-31
Identities = 61/84 (72%), Positives = 68/84 (80%)
Frame = +2
Query: 2 TKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVI 181
TKKVGIVGKYG RYG+S+RK IKKIEI HAKY+CNFCGK +LKRK GIW CK CKKV+
Sbjct: 4 TKKVGIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKKVV 63
Query: 182 AGGAYTHITTAAVTARAHIRRVNE 253
AGGAY TTAA T RA IRR+ +
Sbjct: 64 AGGAYVCSTTAATTIRAAIRRLRD 87
>sp|P32046|RL37A_CHICK 60S ribosomal protein L37a
Length = 92
Score = 128 bits (322), Expect = 4e-30
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = +2
Query: 2 TKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVI 181
TKKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K +
Sbjct: 5 TKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKTV 64
Query: 182 AGGAYTHITTAAVTARAHIRRVNE 253
AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 65 AGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a
Length = 92
Score = 128 bits (321), Expect = 5e-30
Identities = 56/84 (66%), Positives = 70/84 (83%)
Frame = +2
Query: 2 TKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVI 181
TKKVGIVGKYGTR+G+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K++
Sbjct: 5 TKKVGIVGKYGTRFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKIV 64
Query: 182 AGGAYTHITTAAVTARAHIRRVNE 253
AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 65 AGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43
Length = 92
Score = 128 bits (321), Expect = 5e-30
Identities = 55/84 (65%), Positives = 67/84 (79%)
Frame = +2
Query: 2 TKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVI 181
TKKVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKKA+KR GIW+C CKK +
Sbjct: 5 TKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKKTV 64
Query: 182 AGGAYTHITTAAVTARAHIRRVNE 253
AGGAYT T AA T R+ IRR+ E
Sbjct: 65 AGGAYTFSTAAAATVRSTIRRLRE 88
>sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a
sp|P61515|RL37A_RAT 60S ribosomal protein L37a
sp|P61514|RL37A_MOUSE 60S ribosomal protein L37a
Length = 92
Score = 127 bits (319), Expect = 8e-30
Identities = 56/84 (66%), Positives = 69/84 (82%)
Frame = +2
Query: 2 TKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVI 181
TKKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K +
Sbjct: 5 TKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTV 64
Query: 182 AGGAYTHITTAAVTARAHIRRVNE 253
AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 65 AGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|O61462|RL37A_CRYST 60S ribosomal protein L37a
Length = 92
Score = 126 bits (316), Expect = 2e-29
Identities = 55/84 (65%), Positives = 69/84 (82%)
Frame = +2
Query: 2 TKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVI 181
TKKVGIVGKYGTRYG+S+RK +KK+EI H+KY C FCGK A+KR+ VGIW CK C+KV+
Sbjct: 5 TKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVV 64
Query: 182 AGGAYTHITTAAVTARAHIRRVNE 253
AGGA+ + T AAVT R+ +RR+ E
Sbjct: 65 AGGAWVYSTMAAVTVRSAVRRLRE 88
>sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a
Length = 92
Score = 126 bits (316), Expect = 2e-29
Identities = 55/84 (65%), Positives = 69/84 (82%)
Frame = +2
Query: 2 TKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVI 181
TKKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K +
Sbjct: 5 TKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTV 64
Query: 182 AGGAYTHITTAAVTARAHIRRVNE 253
AGGA+T+ TT+AVT ++ I+R+ E
Sbjct: 65 AGGAWTYNTTSAVTVKSAIKRLKE 88
>sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35)
Length = 92
Score = 124 bits (310), Expect = 9e-29
Identities = 55/84 (65%), Positives = 65/84 (77%)
Frame = +2
Query: 2 TKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVI 181
TKKVGI GKYG RYGSS+R+ +KK+EIQ HA+YDC+FCGKK +KR GIW C CKK +
Sbjct: 5 TKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTV 64
Query: 182 AGGAYTHITTAAVTARAHIRRVNE 253
AGGAYT T AA T R+ IRR+ E
Sbjct: 65 AGGAYTVSTAAAATVRSTIRRLRE 88
>sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43
Length = 92
Score = 122 bits (306), Expect = 3e-28
Identities = 52/84 (61%), Positives = 65/84 (77%)
Frame = +2
Query: 2 TKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVI 181
TKKVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKK ++R GIW C CKK +
Sbjct: 5 TKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSCKKTV 64
Query: 182 AGGAYTHITTAAVTARAHIRRVNE 253
AGGAYT T AA T R+ IRR+ +
Sbjct: 65 AGGAYTVSTAAAATVRSTIRRLRD 88
>sp|P43209|RL37A_BRARA 60S ribosomal protein L37a
Length = 93
Score = 122 bits (306), Expect = 3e-28
Identities = 59/85 (69%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 TKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVI 181
TKKVGIVGKYGTRYG+SIRK IKK+E+ H+KY C FCGK +KRK VGIW CK C KV
Sbjct: 5 TKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVK 64
Query: 182 AGGAYTHITTAAVTARAH-IRRVNE 253
AGGAYT T +AVT R+H IRR+ E
Sbjct: 65 AGGAYTMNTASAVTVRSHTIRRLRE 89
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,370,196
Number of Sequences: 369166
Number of extensions: 486031
Number of successful extensions: 1645
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 68,354,980
effective HSP length: 65
effective length of database: 56,347,205
effective search space used: 1690416150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)