Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_H21
(302 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a 129 3e-30
sp|P32046|RL37A_CHICK 60S ribosomal protein L37a 124 5e-29
sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a 124 7e-29
sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43 124 7e-29
sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a >gi|476064... 123 1e-28
sp|O61462|RL37A_CRYST 60S ribosomal protein L37a 122 3e-28
sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a 122 3e-28
sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35) 120 1e-27
sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43 118 4e-27
sp|P43209|RL37A_BRARA 60S ribosomal protein L37a 118 4e-27
>sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a
Length = 91
Score = 129 bits (323), Expect = 3e-30
Identities = 59/82 (71%), Positives = 66/82 (80%)
Frame = +3
Query: 21 KVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAG 200
KVGIVGKYG RYG+S+RK IKKIEI HAKY+CNFCGK +LKRK GIW CK CKKV+AG
Sbjct: 6 KVGIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKKVVAG 65
Query: 201 GAYTHITTAAVTARAHIRRVNE 266
GAY TTAA T RA IRR+ +
Sbjct: 66 GAYVCSTTAATTIRAAIRRLRD 87
>sp|P32046|RL37A_CHICK 60S ribosomal protein L37a
Length = 92
Score = 124 bits (312), Expect = 5e-29
Identities = 55/82 (67%), Positives = 67/82 (81%)
Frame = +3
Query: 21 KVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAG 200
KVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K +AG
Sbjct: 7 KVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKTVAG 66
Query: 201 GAYTHITTAAVTARAHIRRVNE 266
GA+T+ TT+AVT ++ IRR+ E
Sbjct: 67 GAWTYNTTSAVTVKSAIRRLKE 88
>sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a
Length = 92
Score = 124 bits (311), Expect = 7e-29
Identities = 54/82 (65%), Positives = 68/82 (82%)
Frame = +3
Query: 21 KVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAG 200
KVGIVGKYGTR+G+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K++AG
Sbjct: 7 KVGIVGKYGTRFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKIVAG 66
Query: 201 GAYTHITTAAVTARAHIRRVNE 266
GA+T+ TT+AVT ++ IRR+ E
Sbjct: 67 GAWTYNTTSAVTVKSAIRRLKE 88
>sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43
Length = 92
Score = 124 bits (311), Expect = 7e-29
Identities = 53/82 (64%), Positives = 65/82 (79%)
Frame = +3
Query: 21 KVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAG 200
KVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKKA+KR GIW+C CKK +AG
Sbjct: 7 KVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKKTVAG 66
Query: 201 GAYTHITTAAVTARAHIRRVNE 266
GAYT T AA T R+ IRR+ E
Sbjct: 67 GAYTFSTAAAATVRSTIRRLRE 88
>sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a
sp|P61515|RL37A_RAT 60S ribosomal protein L37a
sp|P61514|RL37A_MOUSE 60S ribosomal protein L37a
Length = 92
Score = 123 bits (309), Expect = 1e-28
Identities = 54/82 (65%), Positives = 67/82 (81%)
Frame = +3
Query: 21 KVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAG 200
KVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K +AG
Sbjct: 7 KVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAG 66
Query: 201 GAYTHITTAAVTARAHIRRVNE 266
GA+T+ TT+AVT ++ IRR+ E
Sbjct: 67 GAWTYNTTSAVTVKSAIRRLKE 88
>sp|O61462|RL37A_CRYST 60S ribosomal protein L37a
Length = 92
Score = 122 bits (306), Expect = 3e-28
Identities = 53/82 (64%), Positives = 67/82 (81%)
Frame = +3
Query: 21 KVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAG 200
KVGIVGKYGTRYG+S+RK +KK+EI H+KY C FCGK A+KR+ VGIW CK C+KV+AG
Sbjct: 7 KVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAG 66
Query: 201 GAYTHITTAAVTARAHIRRVNE 266
GA+ + T AAVT R+ +RR+ E
Sbjct: 67 GAWVYSTMAAVTVRSAVRRLRE 88
>sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a
Length = 92
Score = 122 bits (306), Expect = 3e-28
Identities = 53/82 (64%), Positives = 67/82 (81%)
Frame = +3
Query: 21 KVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAG 200
KVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K +AG
Sbjct: 7 KVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAG 66
Query: 201 GAYTHITTAAVTARAHIRRVNE 266
GA+T+ TT+AVT ++ I+R+ E
Sbjct: 67 GAWTYNTTSAVTVKSAIKRLKE 88
>sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35)
Length = 92
Score = 120 bits (300), Expect = 1e-27
Identities = 53/82 (64%), Positives = 63/82 (76%)
Frame = +3
Query: 21 KVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAG 200
KVGI GKYG RYGSS+R+ +KK+EIQ HA+YDC+FCGKK +KR GIW C CKK +AG
Sbjct: 7 KVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG 66
Query: 201 GAYTHITTAAVTARAHIRRVNE 266
GAYT T AA T R+ IRR+ E
Sbjct: 67 GAYTVSTAAAATVRSTIRRLRE 88
>sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43
Length = 92
Score = 118 bits (296), Expect = 4e-27
Identities = 50/82 (60%), Positives = 63/82 (76%)
Frame = +3
Query: 21 KVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAG 200
KVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKK ++R GIW C CKK +AG
Sbjct: 7 KVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSCKKTVAG 66
Query: 201 GAYTHITTAAVTARAHIRRVNE 266
GAYT T AA T R+ IRR+ +
Sbjct: 67 GAYTVSTAAAATVRSTIRRLRD 88
>sp|P43209|RL37A_BRARA 60S ribosomal protein L37a
Length = 93
Score = 118 bits (296), Expect = 4e-27
Identities = 57/83 (68%), Positives = 65/83 (78%), Gaps = 1/83 (1%)
Frame = +3
Query: 21 KVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAG 200
KVGIVGKYGTRYG+SIRK IKK+E+ H+KY C FCGK +KRK VGIW CK C KV AG
Sbjct: 7 KVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAG 66
Query: 201 GAYTHITTAAVTARAH-IRRVNE 266
GAYT T +AVT R+H IRR+ E
Sbjct: 67 GAYTMNTASAVTVRSHTIRRLRE 89
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,455,201
Number of Sequences: 369166
Number of extensions: 533262
Number of successful extensions: 1846
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1837
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)