Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_G22
(136 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a 46 2e-05
sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a 45 5e-05
sp|O61462|RL37A_CRYST 60S ribosomal protein L37a 44 9e-05
sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43 44 9e-05
sp|P32046|RL37A_CHICK 60S ribosomal protein L37a 44 1e-04
sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a >gi|476064... 44 1e-04
sp|Q9HGL8|RL43A_SCHPO 60S ribosomal protein L43-A (L37A) 44 1e-04
sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a 43 3e-04
sp|Q9Y0H7|RL37A_MYXGL 60S ribosomal protein L37a 42 3e-04
sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35) 42 4e-04
>sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a
Length = 91
Score = 46.2 bits (108), Expect = 2e-05
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = +2
Query: 5 CKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 100
CK CKKV+AGGAY TTAA T RA IRR+ +
Sbjct: 56 CKACKKVVAGGAYVCSTTAATTIRAAIRRLRD 87
>sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a
Length = 92
Score = 45.1 bits (105), Expect = 5e-05
Identities = 18/33 (54%), Positives = 26/33 (78%)
Frame = +2
Query: 2 HCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 100
HC C K++AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 56 HCGSCMKIVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|O61462|RL37A_CRYST 60S ribosomal protein L37a
Length = 92
Score = 44.3 bits (103), Expect = 9e-05
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +2
Query: 5 CKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 100
CK C+KV+AGGA+ + T AAVT R+ +RR+ E
Sbjct: 57 CKSCRKVVAGGAWVYSTMAAVTVRSAVRRLRE 88
>sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43
Length = 92
Score = 44.3 bits (103), Expect = 9e-05
Identities = 19/33 (57%), Positives = 23/33 (69%)
Frame = +2
Query: 2 HCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 100
+C CKK +AGGAYT T AA T R+ IRR+ E
Sbjct: 56 NCSSCKKTVAGGAYTFSTAAAATVRSTIRRLRE 88
>sp|P32046|RL37A_CHICK 60S ribosomal protein L37a
Length = 92
Score = 43.9 bits (102), Expect = 1e-04
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +2
Query: 2 HCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 100
HC C K +AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 56 HCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a
sp|P61515|RL37A_RAT 60S ribosomal protein L37a
sp|P61514|RL37A_MOUSE 60S ribosomal protein L37a
Length = 92
Score = 43.9 bits (102), Expect = 1e-04
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +2
Query: 2 HCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 100
HC C K +AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 56 HCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|Q9HGL8|RL43A_SCHPO 60S ribosomal protein L43-A (L37A)
Length = 94
Score = 43.5 bits (101), Expect = 1e-04
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +2
Query: 8 KGCKKVIAGGAYTHITTAAVTARAHIRRVNE 100
KGCKKV+AGGA+T T AA +AR+ IRR+ E
Sbjct: 60 KGCKKVLAGGAWTVTTAAATSARSTIRRLRE 90
>sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a
Length = 92
Score = 42.7 bits (99), Expect = 3e-04
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +2
Query: 2 HCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 100
HC C K +AGGA+T+ TT+AVT ++ I+R+ E
Sbjct: 56 HCGSCMKTVAGGAWTYNTTSAVTVKSAIKRLKE 88
>sp|Q9Y0H7|RL37A_MYXGL 60S ribosomal protein L37a
Length = 85
Score = 42.4 bits (98), Expect = 3e-04
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +2
Query: 2 HCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 100
HC C K +AGGA+T+ T++AVT ++ IRR+ E
Sbjct: 49 HCGSCMKTVAGGAWTYNTSSAVTVKSAIRRLRE 81
>sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35)
Length = 92
Score = 42.0 bits (97), Expect = 4e-04
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +2
Query: 5 CKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 100
C CKK +AGGAYT T AA T R+ IRR+ E
Sbjct: 57 CSCCKKTVAGGAYTVSTAAAATVRSTIRRLRE 88
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,344,460
Number of Sequences: 369166
Number of extensions: 89686
Number of successful extensions: 176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 68,354,980
effective HSP length: 18
effective length of database: 65,029,750
effective search space used: 1690773500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)