Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_A06
(332 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a 136 1e-32
sp|P32046|RL37A_CHICK 60S ribosomal protein L37a 135 2e-32
sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a 135 3e-32
sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43 135 3e-32
sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a >gi|476064... 134 5e-32
sp|O61462|RL37A_CRYST 60S ribosomal protein L37a 133 1e-31
sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a 133 1e-31
sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35) 131 6e-31
sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43 129 2e-30
sp|P43209|RL37A_BRARA 60S ribosomal protein L37a 129 2e-30
>sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a
Length = 91
Score = 136 bits (343), Expect = 1e-32
Identities = 63/86 (73%), Positives = 70/86 (81%)
Frame = +3
Query: 39 KRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 218
KRTKKVGIVGKYG RYG+S+RK IKKIEI HAKY+CNFCGK +LKRK GIW CK CKK
Sbjct: 2 KRTKKVGIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKK 61
Query: 219 VIAGGAYTHITTAAVTARAHIRRVNE 296
V+AGGAY TTAA T RA IRR+ +
Sbjct: 62 VVAGGAYVCSTTAATTIRAAIRRLRD 87
>sp|P32046|RL37A_CHICK 60S ribosomal protein L37a
Length = 92
Score = 135 bits (341), Expect = 2e-32
Identities = 61/88 (69%), Positives = 73/88 (82%)
Frame = +3
Query: 33 MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
MAKRTKKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSC 60
Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
K +AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a
Length = 92
Score = 135 bits (340), Expect = 3e-32
Identities = 60/88 (68%), Positives = 74/88 (84%)
Frame = +3
Query: 33 MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
MAKRTKKVGIVGKYGTR+G+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C
Sbjct: 1 MAKRTKKVGIVGKYGTRFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSC 60
Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
K++AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 61 MKIVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43
Length = 92
Score = 135 bits (340), Expect = 3e-32
Identities = 59/88 (67%), Positives = 71/88 (80%)
Frame = +3
Query: 33 MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
MAKRTKKVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKKA+KR GIW+C C
Sbjct: 1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSC 60
Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
KK +AGGAYT T AA T R+ IRR+ E
Sbjct: 61 KKTVAGGAYTFSTAAAATVRSTIRRLRE 88
>sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a
sp|P61515|RL37A_RAT 60S ribosomal protein L37a
sp|P61514|RL37A_MOUSE 60S ribosomal protein L37a
Length = 92
Score = 134 bits (338), Expect = 5e-32
Identities = 60/88 (68%), Positives = 73/88 (82%)
Frame = +3
Query: 33 MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
MAKRTKKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
K +AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|O61462|RL37A_CRYST 60S ribosomal protein L37a
Length = 92
Score = 133 bits (335), Expect = 1e-31
Identities = 59/88 (67%), Positives = 73/88 (82%)
Frame = +3
Query: 33 MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
MAKRTKKVGIVGKYGTRYG+S+RK +KK+EI H+KY C FCGK A+KR+ VGIW CK C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSC 60
Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
+KV+AGGA+ + T AAVT R+ +RR+ E
Sbjct: 61 RKVVAGGAWVYSTMAAVTVRSAVRRLRE 88
>sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a
Length = 92
Score = 133 bits (335), Expect = 1e-31
Identities = 59/88 (67%), Positives = 73/88 (82%)
Frame = +3
Query: 33 MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
MAKRTKKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSC 60
Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
K +AGGA+T+ TT+AVT ++ I+R+ E
Sbjct: 61 MKTVAGGAWTYNTTSAVTVKSAIKRLKE 88
>sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35)
Length = 92
Score = 131 bits (329), Expect = 6e-31
Identities = 59/88 (67%), Positives = 69/88 (78%)
Frame = +3
Query: 33 MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
MAKRTKKVGI GKYG RYGSS+R+ +KK+EIQ HA+YDC+FCGKK +KR GIW C C
Sbjct: 1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCC 60
Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
KK +AGGAYT T AA T R+ IRR+ E
Sbjct: 61 KKTVAGGAYTVSTAAAATVRSTIRRLRE 88
>sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43
Length = 92
Score = 129 bits (325), Expect = 2e-30
Identities = 56/88 (63%), Positives = 69/88 (78%)
Frame = +3
Query: 33 MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
MAKRTKKVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKK ++R GIW C C
Sbjct: 1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSC 60
Query: 213 KKVIAGGAYTHITTAAVTARAHIRRVNE 296
KK +AGGAYT T AA T R+ IRR+ +
Sbjct: 61 KKTVAGGAYTVSTAAAATVRSTIRRLRD 88
>sp|P43209|RL37A_BRARA 60S ribosomal protein L37a
Length = 93
Score = 129 bits (325), Expect = 2e-30
Identities = 63/89 (70%), Positives = 71/89 (79%), Gaps = 1/89 (1%)
Frame = +3
Query: 33 MAKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGC 212
MAKRTKKVGIVGKYGTRYG+SIRK IKK+E+ H+KY C FCGK +KRK VGIW CK C
Sbjct: 1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60
Query: 213 KKVIAGGAYTHITTAAVTARAH-IRRVNE 296
KV AGGAYT T +AVT R+H IRR+ E
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSHTIRRLRE 89
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,695,382
Number of Sequences: 369166
Number of extensions: 556336
Number of successful extensions: 1970
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1961
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1726260800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)