Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_J18
(279 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a 127 1e-29
sp|P32046|RL37A_CHICK 60S ribosomal protein L37a 122 2e-28
sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a 122 3e-28
sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43 122 3e-28
sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a >gi|476064... 121 4e-28
sp|O61462|RL37A_CRYST 60S ribosomal protein L37a 120 1e-27
sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a 120 1e-27
sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35) 118 5e-27
sp|Q9Y0H7|RL37A_MYXGL 60S ribosomal protein L37a 118 5e-27
sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43 116 1e-26
>sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a
Length = 91
Score = 127 bits (318), Expect = 1e-29
Identities = 58/81 (71%), Positives = 65/81 (80%)
Frame = +1
Query: 1 VGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGG 180
VGIVGKYG RYG+S+RK IKKIEI HAKY+CNFCGK +LKRK GIW CK CKKV+AGG
Sbjct: 7 VGIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKKVVAGG 66
Query: 181 AYTHITTAAVTARAHIRRVNE 243
AY TTAA T RA IRR+ +
Sbjct: 67 AYVCSTTAATTIRAAIRRLRD 87
>sp|P32046|RL37A_CHICK 60S ribosomal protein L37a
Length = 92
Score = 122 bits (307), Expect = 2e-28
Identities = 54/81 (66%), Positives = 66/81 (81%)
Frame = +1
Query: 1 VGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGG 180
VGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K +AGG
Sbjct: 8 VGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKTVAGG 67
Query: 181 AYTHITTAAVTARAHIRRVNE 243
A+T+ TT+AVT ++ IRR+ E
Sbjct: 68 AWTYNTTSAVTVKSAIRRLKE 88
>sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a
Length = 92
Score = 122 bits (306), Expect = 3e-28
Identities = 53/81 (65%), Positives = 67/81 (82%)
Frame = +1
Query: 1 VGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGG 180
VGIVGKYGTR+G+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K++AGG
Sbjct: 8 VGIVGKYGTRFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKIVAGG 67
Query: 181 AYTHITTAAVTARAHIRRVNE 243
A+T+ TT+AVT ++ IRR+ E
Sbjct: 68 AWTYNTTSAVTVKSAIRRLKE 88
>sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43
Length = 92
Score = 122 bits (306), Expect = 3e-28
Identities = 52/81 (64%), Positives = 64/81 (79%)
Frame = +1
Query: 1 VGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGG 180
VGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKKA+KR GIW+C CKK +AGG
Sbjct: 8 VGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKKTVAGG 67
Query: 181 AYTHITTAAVTARAHIRRVNE 243
AYT T AA T R+ IRR+ E
Sbjct: 68 AYTFSTAAAATVRSTIRRLRE 88
>sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a
sp|P61515|RL37A_RAT 60S ribosomal protein L37a
sp|P61514|RL37A_MOUSE 60S ribosomal protein L37a
Length = 92
Score = 121 bits (304), Expect = 4e-28
Identities = 53/81 (65%), Positives = 66/81 (81%)
Frame = +1
Query: 1 VGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGG 180
VGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K +AGG
Sbjct: 8 VGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGG 67
Query: 181 AYTHITTAAVTARAHIRRVNE 243
A+T+ TT+AVT ++ IRR+ E
Sbjct: 68 AWTYNTTSAVTVKSAIRRLKE 88
>sp|O61462|RL37A_CRYST 60S ribosomal protein L37a
Length = 92
Score = 120 bits (301), Expect = 1e-27
Identities = 52/81 (64%), Positives = 66/81 (81%)
Frame = +1
Query: 1 VGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGG 180
VGIVGKYGTRYG+S+RK +KK+EI H+KY C FCGK A+KR+ VGIW CK C+KV+AGG
Sbjct: 8 VGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGG 67
Query: 181 AYTHITTAAVTARAHIRRVNE 243
A+ + T AAVT R+ +RR+ E
Sbjct: 68 AWVYSTMAAVTVRSAVRRLRE 88
>sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a
Length = 92
Score = 120 bits (301), Expect = 1e-27
Identities = 52/81 (64%), Positives = 66/81 (81%)
Frame = +1
Query: 1 VGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGG 180
VGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K +AGG
Sbjct: 8 VGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGG 67
Query: 181 AYTHITTAAVTARAHIRRVNE 243
A+T+ TT+AVT ++ I+R+ E
Sbjct: 68 AWTYNTTSAVTVKSAIKRLKE 88
>sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35)
Length = 92
Score = 118 bits (295), Expect = 5e-27
Identities = 52/81 (64%), Positives = 62/81 (76%)
Frame = +1
Query: 1 VGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGG 180
VGI GKYG RYGSS+R+ +KK+EIQ HA+YDC+FCGKK +KR GIW C CKK +AGG
Sbjct: 8 VGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGG 67
Query: 181 AYTHITTAAVTARAHIRRVNE 243
AYT T AA T R+ IRR+ E
Sbjct: 68 AYTVSTAAAATVRSTIRRLRE 88
>sp|Q9Y0H7|RL37A_MYXGL 60S ribosomal protein L37a
Length = 85
Score = 118 bits (295), Expect = 5e-27
Identities = 51/81 (62%), Positives = 65/81 (80%)
Frame = +1
Query: 1 VGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGG 180
VGIVGKYGTRYG+S+RK +KKIEI H+KY C FCGK +KR+ VGIWHC C K +AGG
Sbjct: 1 VGIVGKYGTRYGASLRKMVKKIEITQHSKYTCTFCGKTKMKRRAVGIWHCGSCMKTVAGG 60
Query: 181 AYTHITTAAVTARAHIRRVNE 243
A+T+ T++AVT ++ IRR+ E
Sbjct: 61 AWTYNTSSAVTVKSAIRRLRE 81
>sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43
Length = 92
Score = 116 bits (291), Expect = 1e-26
Identities = 49/81 (60%), Positives = 62/81 (76%)
Frame = +1
Query: 1 VGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGG 180
VGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKK ++R GIW C CKK +AGG
Sbjct: 8 VGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSCKKTVAGG 67
Query: 181 AYTHITTAAVTARAHIRRVNE 243
AYT T AA T R+ IRR+ +
Sbjct: 68 AYTVSTAAAATVRSTIRRLRD 88
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,763,942
Number of Sequences: 369166
Number of extensions: 449820
Number of successful extensions: 1551
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)