Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_L02
(230 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a 97 9e-21
sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43 94 8e-20
sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a 93 2e-19
sp|P32046|RL37A_CHICK 60S ribosomal protein L37a 92 4e-19
sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a >gi|476064... 91 8e-19
sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35) 90 1e-18
sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a 90 2e-18
sp|O61462|RL37A_CRYST 60S ribosomal protein L37a 89 3e-18
sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43 89 4e-18
sp|Q9Y0H7|RL37A_MYXGL 60S ribosomal protein L37a 87 9e-18
>sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a
Length = 91
Score = 97.4 bits (241), Expect = 9e-21
Identities = 44/63 (69%), Positives = 49/63 (77%)
Frame = +3
Query: 6 IKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRR 185
IKKIEI HAKY+CNFCGK +LKRK GIW CK CKKV+AGGAY TTAA T RA IRR
Sbjct: 25 IKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKKVVAGGAYVCSTTAATTIRAAIRR 84
Query: 186 VNE 194
+ +
Sbjct: 85 LRD 87
>sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43
Length = 92
Score = 94.4 bits (233), Expect = 8e-20
Identities = 39/63 (61%), Positives = 49/63 (77%)
Frame = +3
Query: 6 IKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRR 185
+KK+E+Q HA+YDC+FCGKKA+KR GIW+C CKK +AGGAYT T AA T R+ IRR
Sbjct: 26 VKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKKTVAGGAYTFSTAAAATVRSTIRR 85
Query: 186 VNE 194
+ E
Sbjct: 86 LRE 88
>sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a
Length = 92
Score = 93.2 bits (230), Expect = 2e-19
Identities = 39/63 (61%), Positives = 50/63 (79%)
Frame = +3
Query: 6 IKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRR 185
+KKIEI HAKY C+FCGK +KRK VGIWHC C K++AGGA+T+ TT+AVT ++ IRR
Sbjct: 26 VKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKIVAGGAWTYNTTSAVTVKSAIRR 85
Query: 186 VNE 194
+ E
Sbjct: 86 LKE 88
>sp|P32046|RL37A_CHICK 60S ribosomal protein L37a
Length = 92
Score = 92.0 bits (227), Expect = 4e-19
Identities = 39/63 (61%), Positives = 49/63 (77%)
Frame = +3
Query: 6 IKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRR 185
+KKIEI HAKY C+FCGK +KRK VGIWHC C K +AGGA+T+ TT+AVT ++ IRR
Sbjct: 26 VKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRR 85
Query: 186 VNE 194
+ E
Sbjct: 86 LKE 88
>sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a
sp|P61515|RL37A_RAT 60S ribosomal protein L37a
sp|P61514|RL37A_MOUSE 60S ribosomal protein L37a
Length = 92
Score = 90.9 bits (224), Expect = 8e-19
Identities = 38/63 (60%), Positives = 49/63 (77%)
Frame = +3
Query: 6 IKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRR 185
+KKIEI HAKY C+FCGK +KR+ VGIWHC C K +AGGA+T+ TT+AVT ++ IRR
Sbjct: 26 VKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRR 85
Query: 186 VNE 194
+ E
Sbjct: 86 LKE 88
>sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35)
Length = 92
Score = 90.1 bits (222), Expect = 1e-18
Identities = 39/63 (61%), Positives = 47/63 (74%)
Frame = +3
Query: 6 IKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRR 185
+KK+EIQ HA+YDC+FCGKK +KR GIW C CKK +AGGAYT T AA T R+ IRR
Sbjct: 26 VKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRSTIRR 85
Query: 186 VNE 194
+ E
Sbjct: 86 LRE 88
>sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a
Length = 92
Score = 89.7 bits (221), Expect = 2e-18
Identities = 37/63 (58%), Positives = 49/63 (77%)
Frame = +3
Query: 6 IKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRR 185
+KKIEI HAKY C+FCGK +KR+ VGIWHC C K +AGGA+T+ TT+AVT ++ I+R
Sbjct: 26 VKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIKR 85
Query: 186 VNE 194
+ E
Sbjct: 86 LKE 88
>sp|O61462|RL37A_CRYST 60S ribosomal protein L37a
Length = 92
Score = 89.0 bits (219), Expect = 3e-18
Identities = 37/63 (58%), Positives = 49/63 (77%)
Frame = +3
Query: 6 IKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRR 185
+KK+EI H+KY C FCGK A+KR+ VGIW CK C+KV+AGGA+ + T AAVT R+ +RR
Sbjct: 26 VKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGGAWVYSTMAAVTVRSAVRR 85
Query: 186 VNE 194
+ E
Sbjct: 86 LRE 88
>sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43
Length = 92
Score = 88.6 bits (218), Expect = 4e-18
Identities = 36/63 (57%), Positives = 47/63 (74%)
Frame = +3
Query: 6 IKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRR 185
+KK+E+Q HA+YDC+FCGKK ++R GIW C CKK +AGGAYT T AA T R+ IRR
Sbjct: 26 VKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSCKKTVAGGAYTVSTAAAATVRSTIRR 85
Query: 186 VNE 194
+ +
Sbjct: 86 LRD 88
>sp|Q9Y0H7|RL37A_MYXGL 60S ribosomal protein L37a
Length = 85
Score = 87.4 bits (215), Expect = 9e-18
Identities = 36/63 (57%), Positives = 48/63 (76%)
Frame = +3
Query: 6 IKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRR 185
+KKIEI H+KY C FCGK +KR+ VGIWHC C K +AGGA+T+ T++AVT ++ IRR
Sbjct: 19 VKKIEITQHSKYTCTFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTSSAVTVKSAIRR 78
Query: 186 VNE 194
+ E
Sbjct: 79 LRE 81
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,510,895
Number of Sequences: 369166
Number of extensions: 306261
Number of successful extensions: 1193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 68,354,980
effective HSP length: 47
effective length of database: 59,672,435
effective search space used: 1730500615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)