Planarian EST Database


Dr_sW_020_I12

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_020_I12
         (277 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O17307|RL37A_SCHMA  60S ribosomal protein L37a                 125   3e-29
sp|P32046|RL37A_CHICK  60S ribosomal protein L37a                 121   6e-28
sp|Q7SZB4|RL37A_XENLA  60S ribosomal protein L37a                 120   7e-28
sp|Q751L1|RL43_ASHGO  60S ribosomal protein L43                   120   7e-28
sp|P61513|RL37A_HUMAN  60S ribosomal protein L37a >gi|476064...   120   1e-27
sp|O61462|RL37A_CRYST  60S ribosomal protein L37a                 119   3e-27
sp|Q90YT0|RL37A_ICTPU  60S ribosomal protein L37a                 119   3e-27
sp|P49631|RL43_YEAST  60S ribosomal protein L43 (L37A) (YL35)     116   1e-26
sp|Q9Y0H7|RL37A_MYXGL  60S ribosomal protein L37a                 116   1e-26
sp|Q9XHE4|RL37A_GOSHI  60S ribosomal protein L37a                 116   1e-26
>sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a
          Length = 91

 Score =  125 bits (314), Expect = 3e-29
 Identities = 57/80 (71%), Positives = 64/80 (80%)
 Frame = +2

Query: 2   GIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGA 181
           GIVGKYG RYG+S+RK IKKIEI  HAKY+CNFCGK +LKRK  GIW CK CKKV+AGGA
Sbjct: 8   GIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKKVVAGGA 67

Query: 182 YTHITTAAVTARAHIRRVNE 241
           Y   TTAA T RA IRR+ +
Sbjct: 68  YVCSTTAATTIRAAIRRLRD 87
>sp|P32046|RL37A_CHICK 60S ribosomal protein L37a
          Length = 92

 Score =  121 bits (303), Expect = 6e-28
 Identities = 53/80 (66%), Positives = 65/80 (81%)
 Frame = +2

Query: 2   GIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGA 181
           GIVGKYGTRYG+S+RK +KKIEI  HAKY C+FCGK  +KRK VGIWHC  C K +AGGA
Sbjct: 9   GIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKTVAGGA 68

Query: 182 YTHITTAAVTARAHIRRVNE 241
           +T+ TT+AVT ++ IRR+ E
Sbjct: 69  WTYNTTSAVTVKSAIRRLKE 88
>sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a
          Length = 92

 Score =  120 bits (302), Expect = 7e-28
 Identities = 52/80 (65%), Positives = 66/80 (82%)
 Frame = +2

Query: 2   GIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGA 181
           GIVGKYGTR+G+S+RK +KKIEI  HAKY C+FCGK  +KRK VGIWHC  C K++AGGA
Sbjct: 9   GIVGKYGTRFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKIVAGGA 68

Query: 182 YTHITTAAVTARAHIRRVNE 241
           +T+ TT+AVT ++ IRR+ E
Sbjct: 69  WTYNTTSAVTVKSAIRRLKE 88
>sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43
          Length = 92

 Score =  120 bits (302), Expect = 7e-28
 Identities = 51/80 (63%), Positives = 63/80 (78%)
 Frame = +2

Query: 2   GIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGA 181
           GI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKKA+KR   GIW+C  CKK +AGGA
Sbjct: 9   GITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKKTVAGGA 68

Query: 182 YTHITTAAVTARAHIRRVNE 241
           YT  T AA T R+ IRR+ E
Sbjct: 69  YTFSTAAAATVRSTIRRLRE 88
>sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a
 sp|P61515|RL37A_RAT 60S ribosomal protein L37a
 sp|P61514|RL37A_MOUSE 60S ribosomal protein L37a
          Length = 92

 Score =  120 bits (300), Expect = 1e-27
 Identities = 52/80 (65%), Positives = 65/80 (81%)
 Frame = +2

Query: 2   GIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGA 181
           GIVGKYGTRYG+S+RK +KKIEI  HAKY C+FCGK  +KR+ VGIWHC  C K +AGGA
Sbjct: 9   GIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGA 68

Query: 182 YTHITTAAVTARAHIRRVNE 241
           +T+ TT+AVT ++ IRR+ E
Sbjct: 69  WTYNTTSAVTVKSAIRRLKE 88
>sp|O61462|RL37A_CRYST 60S ribosomal protein L37a
          Length = 92

 Score =  119 bits (297), Expect = 3e-27
 Identities = 51/80 (63%), Positives = 65/80 (81%)
 Frame = +2

Query: 2   GIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGA 181
           GIVGKYGTRYG+S+RK +KK+EI  H+KY C FCGK A+KR+ VGIW CK C+KV+AGGA
Sbjct: 9   GIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGGA 68

Query: 182 YTHITTAAVTARAHIRRVNE 241
           + + T AAVT R+ +RR+ E
Sbjct: 69  WVYSTMAAVTVRSAVRRLRE 88
>sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a
          Length = 92

 Score =  119 bits (297), Expect = 3e-27
 Identities = 51/80 (63%), Positives = 65/80 (81%)
 Frame = +2

Query: 2   GIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGA 181
           GIVGKYGTRYG+S+RK +KKIEI  HAKY C+FCGK  +KR+ VGIWHC  C K +AGGA
Sbjct: 9   GIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGA 68

Query: 182 YTHITTAAVTARAHIRRVNE 241
           +T+ TT+AVT ++ I+R+ E
Sbjct: 69  WTYNTTSAVTVKSAIKRLKE 88
>sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35)
          Length = 92

 Score =  116 bits (291), Expect = 1e-26
 Identities = 51/80 (63%), Positives = 61/80 (76%)
 Frame = +2

Query: 2   GIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGA 181
           GI GKYG RYGSS+R+ +KK+EIQ HA+YDC+FCGKK +KR   GIW C  CKK +AGGA
Sbjct: 9   GITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGA 68

Query: 182 YTHITTAAVTARAHIRRVNE 241
           YT  T AA T R+ IRR+ E
Sbjct: 69  YTVSTAAAATVRSTIRRLRE 88
>sp|Q9Y0H7|RL37A_MYXGL 60S ribosomal protein L37a
          Length = 85

 Score =  116 bits (291), Expect = 1e-26
 Identities = 50/80 (62%), Positives = 64/80 (80%)
 Frame = +2

Query: 2   GIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGA 181
           GIVGKYGTRYG+S+RK +KKIEI  H+KY C FCGK  +KR+ VGIWHC  C K +AGGA
Sbjct: 2   GIVGKYGTRYGASLRKMVKKIEITQHSKYTCTFCGKTKMKRRAVGIWHCGSCMKTVAGGA 61

Query: 182 YTHITTAAVTARAHIRRVNE 241
           +T+ T++AVT ++ IRR+ E
Sbjct: 62  WTYNTSSAVTVKSAIRRLRE 81
>sp|Q9XHE4|RL37A_GOSHI 60S ribosomal protein L37a
          Length = 92

 Score =  116 bits (291), Expect = 1e-26
 Identities = 54/80 (67%), Positives = 63/80 (78%)
 Frame = +2

Query: 2   GIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGA 181
           GIVGKYGTRYG+S+RK IKK+E+  H+KY C FCGK A+KRK VGIW CK C KV AGGA
Sbjct: 9   GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGA 68

Query: 182 YTHITTAAVTARAHIRRVNE 241
           YT  T +AVT R+ IRR+ E
Sbjct: 69  YTLNTASAVTVRSTIRRLRE 88
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,461,152
Number of Sequences: 369166
Number of extensions: 443511
Number of successful extensions: 1524
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 68,354,980
effective HSP length: 61
effective length of database: 57,086,145
effective search space used: 1712584350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)