Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_I10
(304 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a 135 3e-32
sp|P32046|RL37A_CHICK 60S ribosomal protein L37a 131 6e-31
sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a 130 7e-31
sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43 130 7e-31
sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a >gi|476064... 130 1e-30
sp|O61462|RL37A_CRYST 60S ribosomal protein L37a 129 3e-30
sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a 129 3e-30
sp|Q9XHE4|RL37A_GOSHI 60S ribosomal protein L37a 127 1e-29
sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35) 126 1e-29
sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43 125 4e-29
>sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a
Length = 91
Score = 135 bits (340), Expect = 3e-32
Identities = 62/86 (72%), Positives = 70/86 (81%)
Frame = +2
Query: 11 RRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 190
+RTKKVGIVGKYG RYG+S+RK IKKIEI HAKY+CNFCGK +LKRK GIW CK CKK
Sbjct: 2 KRTKKVGIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKK 61
Query: 191 VIAGGAYTHITTAAVTARAHIRRVNE 268
V+AGGAY TTAA T RA IRR+ +
Sbjct: 62 VVAGGAYVCSTTAATTIRAAIRRLRD 87
>sp|P32046|RL37A_CHICK 60S ribosomal protein L37a
Length = 92
Score = 131 bits (329), Expect = 6e-31
Identities = 58/86 (67%), Positives = 71/86 (82%)
Frame = +2
Query: 11 RRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 190
+RTKKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K
Sbjct: 3 KRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMK 62
Query: 191 VIAGGAYTHITTAAVTARAHIRRVNE 268
+AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 63 TVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a
Length = 92
Score = 130 bits (328), Expect = 7e-31
Identities = 57/86 (66%), Positives = 72/86 (83%)
Frame = +2
Query: 11 RRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 190
+RTKKVGIVGKYGTR+G+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K
Sbjct: 3 KRTKKVGIVGKYGTRFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMK 62
Query: 191 VIAGGAYTHITTAAVTARAHIRRVNE 268
++AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 63 IVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43
Length = 92
Score = 130 bits (328), Expect = 7e-31
Identities = 56/86 (65%), Positives = 69/86 (80%)
Frame = +2
Query: 11 RRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 190
+RTKKVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKKA+KR GIW+C CKK
Sbjct: 3 KRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKK 62
Query: 191 VIAGGAYTHITTAAVTARAHIRRVNE 268
+AGGAYT T AA T R+ IRR+ E
Sbjct: 63 TVAGGAYTFSTAAAATVRSTIRRLRE 88
>sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a
sp|P61515|RL37A_RAT 60S ribosomal protein L37a
sp|P61514|RL37A_MOUSE 60S ribosomal protein L37a
Length = 92
Score = 130 bits (326), Expect = 1e-30
Identities = 57/86 (66%), Positives = 71/86 (82%)
Frame = +2
Query: 11 RRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 190
+RTKKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K
Sbjct: 3 KRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMK 62
Query: 191 VIAGGAYTHITTAAVTARAHIRRVNE 268
+AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 63 TVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|O61462|RL37A_CRYST 60S ribosomal protein L37a
Length = 92
Score = 129 bits (323), Expect = 3e-30
Identities = 56/86 (65%), Positives = 71/86 (82%)
Frame = +2
Query: 11 RRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 190
+RTKKVGIVGKYGTRYG+S+RK +KK+EI H+KY C FCGK A+KR+ VGIW CK C+K
Sbjct: 3 KRTKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRK 62
Query: 191 VIAGGAYTHITTAAVTARAHIRRVNE 268
V+AGGA+ + T AAVT R+ +RR+ E
Sbjct: 63 VVAGGAWVYSTMAAVTVRSAVRRLRE 88
>sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a
Length = 92
Score = 129 bits (323), Expect = 3e-30
Identities = 56/86 (65%), Positives = 71/86 (82%)
Frame = +2
Query: 11 RRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 190
+RTKKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K
Sbjct: 3 KRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMK 62
Query: 191 VIAGGAYTHITTAAVTARAHIRRVNE 268
+AGGA+T+ TT+AVT ++ I+R+ E
Sbjct: 63 TVAGGAWTYNTTSAVTVKSAIKRLKE 88
>sp|Q9XHE4|RL37A_GOSHI 60S ribosomal protein L37a
Length = 92
Score = 127 bits (318), Expect = 1e-29
Identities = 59/87 (67%), Positives = 69/87 (79%)
Frame = +2
Query: 8 TRRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCK 187
T+RTKK GIVGKYGTRYG+S+RK IKK+E+ H+KY C FCGK A+KRK VGIW CK C
Sbjct: 2 TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACG 61
Query: 188 KVIAGGAYTHITTAAVTARAHIRRVNE 268
KV AGGAYT T +AVT R+ IRR+ E
Sbjct: 62 KVKAGGAYTLNTASAVTVRSTIRRLRE 88
>sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35)
Length = 92
Score = 126 bits (317), Expect = 1e-29
Identities = 56/86 (65%), Positives = 67/86 (77%)
Frame = +2
Query: 11 RRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 190
+RTKKVGI GKYG RYGSS+R+ +KK+EIQ HA+YDC+FCGKK +KR GIW C CKK
Sbjct: 3 KRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKK 62
Query: 191 VIAGGAYTHITTAAVTARAHIRRVNE 268
+AGGAYT T AA T R+ IRR+ E
Sbjct: 63 TVAGGAYTVSTAAAATVRSTIRRLRE 88
>sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43
Length = 92
Score = 125 bits (313), Expect = 4e-29
Identities = 53/86 (61%), Positives = 67/86 (77%)
Frame = +2
Query: 11 RRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 190
+RTKKVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKK ++R GIW C CKK
Sbjct: 3 KRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSCKK 62
Query: 191 VIAGGAYTHITTAAVTARAHIRRVNE 268
+AGGAYT T AA T R+ IRR+ +
Sbjct: 63 TVAGGAYTVSTAAAATVRSTIRRLRD 88
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,323,810
Number of Sequences: 369166
Number of extensions: 530305
Number of successful extensions: 1844
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1835
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1723856215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)