Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_L09
(271 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a 121 4e-28
sp|P32046|RL37A_CHICK 60S ribosomal protein L37a 117 8e-27
sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a 117 1e-26
sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43 117 1e-26
sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a >gi|476064... 116 2e-26
sp|O61462|RL37A_CRYST 60S ribosomal protein L37a 115 4e-26
sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a 115 4e-26
sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35) 112 2e-25
sp|Q9Y0H7|RL37A_MYXGL 60S ribosomal protein L37a 112 2e-25
sp|Q9XHE4|RL37A_GOSHI 60S ribosomal protein L37a 112 2e-25
>sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a
Length = 91
Score = 121 bits (304), Expect = 4e-28
Identities = 55/78 (70%), Positives = 62/78 (79%)
Frame = +2
Query: 2 VGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYT 181
VGKYG RYG+S+RK IKKIEI HAKY+CNFCGK +LKRK GIW CK CKKV+AGGAY
Sbjct: 10 VGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKKVVAGGAYV 69
Query: 182 HITTAAVTARAHIRRVNE 235
TTAA T RA IRR+ +
Sbjct: 70 CSTTAATTIRAAIRRLRD 87
>sp|P32046|RL37A_CHICK 60S ribosomal protein L37a
Length = 92
Score = 117 bits (293), Expect = 8e-27
Identities = 51/78 (65%), Positives = 63/78 (80%)
Frame = +2
Query: 2 VGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYT 181
VGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K +AGGA+T
Sbjct: 11 VGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKTVAGGAWT 70
Query: 182 HITTAAVTARAHIRRVNE 235
+ TT+AVT ++ IRR+ E
Sbjct: 71 YNTTSAVTVKSAIRRLKE 88
>sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a
Length = 92
Score = 117 bits (292), Expect = 1e-26
Identities = 50/78 (64%), Positives = 64/78 (82%)
Frame = +2
Query: 2 VGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYT 181
VGKYGTR+G+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K++AGGA+T
Sbjct: 11 VGKYGTRFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKIVAGGAWT 70
Query: 182 HITTAAVTARAHIRRVNE 235
+ TT+AVT ++ IRR+ E
Sbjct: 71 YNTTSAVTVKSAIRRLKE 88
>sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43
Length = 92
Score = 117 bits (292), Expect = 1e-26
Identities = 49/77 (63%), Positives = 61/77 (79%)
Frame = +2
Query: 5 GKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTH 184
GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKKA+KR GIW+C CKK +AGGAYT
Sbjct: 12 GKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKKTVAGGAYTF 71
Query: 185 ITTAAVTARAHIRRVNE 235
T AA T R+ IRR+ E
Sbjct: 72 STAAAATVRSTIRRLRE 88
>sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a
sp|P61515|RL37A_RAT 60S ribosomal protein L37a
sp|P61514|RL37A_MOUSE 60S ribosomal protein L37a
Length = 92
Score = 116 bits (290), Expect = 2e-26
Identities = 50/78 (64%), Positives = 63/78 (80%)
Frame = +2
Query: 2 VGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYT 181
VGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K +AGGA+T
Sbjct: 11 VGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWT 70
Query: 182 HITTAAVTARAHIRRVNE 235
+ TT+AVT ++ IRR+ E
Sbjct: 71 YNTTSAVTVKSAIRRLKE 88
>sp|O61462|RL37A_CRYST 60S ribosomal protein L37a
Length = 92
Score = 115 bits (287), Expect = 4e-26
Identities = 49/78 (62%), Positives = 63/78 (80%)
Frame = +2
Query: 2 VGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYT 181
VGKYGTRYG+S+RK +KK+EI H+KY C FCGK A+KR+ VGIW CK C+KV+AGGA+
Sbjct: 11 VGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGGAWV 70
Query: 182 HITTAAVTARAHIRRVNE 235
+ T AAVT R+ +RR+ E
Sbjct: 71 YSTMAAVTVRSAVRRLRE 88
>sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a
Length = 92
Score = 115 bits (287), Expect = 4e-26
Identities = 49/78 (62%), Positives = 63/78 (80%)
Frame = +2
Query: 2 VGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYT 181
VGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K +AGGA+T
Sbjct: 11 VGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWT 70
Query: 182 HITTAAVTARAHIRRVNE 235
+ TT+AVT ++ I+R+ E
Sbjct: 71 YNTTSAVTVKSAIKRLKE 88
>sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35)
Length = 92
Score = 112 bits (281), Expect = 2e-25
Identities = 49/77 (63%), Positives = 59/77 (76%)
Frame = +2
Query: 5 GKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYTH 184
GKYG RYGSS+R+ +KK+EIQ HA+YDC+FCGKK +KR GIW C CKK +AGGAYT
Sbjct: 12 GKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTV 71
Query: 185 ITTAAVTARAHIRRVNE 235
T AA T R+ IRR+ E
Sbjct: 72 STAAAATVRSTIRRLRE 88
>sp|Q9Y0H7|RL37A_MYXGL 60S ribosomal protein L37a
Length = 85
Score = 112 bits (281), Expect = 2e-25
Identities = 48/78 (61%), Positives = 62/78 (79%)
Frame = +2
Query: 2 VGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYT 181
VGKYGTRYG+S+RK +KKIEI H+KY C FCGK +KR+ VGIWHC C K +AGGA+T
Sbjct: 4 VGKYGTRYGASLRKMVKKIEITQHSKYTCTFCGKTKMKRRAVGIWHCGSCMKTVAGGAWT 63
Query: 182 HITTAAVTARAHIRRVNE 235
+ T++AVT ++ IRR+ E
Sbjct: 64 YNTSSAVTVKSAIRRLRE 81
>sp|Q9XHE4|RL37A_GOSHI 60S ribosomal protein L37a
Length = 92
Score = 112 bits (281), Expect = 2e-25
Identities = 52/78 (66%), Positives = 61/78 (78%)
Frame = +2
Query: 2 VGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIAGGAYT 181
VGKYGTRYG+S+RK IKK+E+ H+KY C FCGK A+KRK VGIW CK C KV AGGAYT
Sbjct: 11 VGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGAYT 70
Query: 182 HITTAAVTARAHIRRVNE 235
T +AVT R+ IRR+ E
Sbjct: 71 LNTASAVTVRSTIRRLRE 88
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,354,390
Number of Sequences: 369166
Number of extensions: 420527
Number of successful extensions: 1497
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 68,354,980
effective HSP length: 59
effective length of database: 57,455,615
effective search space used: 1723668450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)