Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_B01
(312 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a 136 1e-32
sp|P32046|RL37A_CHICK 60S ribosomal protein L37a 134 8e-32
sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a 133 1e-31
sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43 133 1e-31
sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a >gi|476064... 132 2e-31
sp|O61462|RL37A_CRYST 60S ribosomal protein L37a 131 4e-31
sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a 131 4e-31
sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35) 129 2e-30
sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43 127 6e-30
sp|P43209|RL37A_BRARA 60S ribosomal protein L37a 127 6e-30
>sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a
Length = 91
Score = 136 bits (343), Expect = 1e-32
Identities = 63/86 (73%), Positives = 70/86 (81%)
Frame = +1
Query: 19 KRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKK 198
KRTKKVGIVGKYG RYG+S+RK IKKIEI HAKY+CNFCGK +LKRK GIW CK CKK
Sbjct: 2 KRTKKVGIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKK 61
Query: 199 VIAGGAYTHITTAAVTARAHIRRVNE 276
V+AGGAY TTAA T RA IRR+ +
Sbjct: 62 VVAGGAYVCSTTAATTIRAAIRRLRD 87
>sp|P32046|RL37A_CHICK 60S ribosomal protein L37a
Length = 92
Score = 134 bits (336), Expect = 8e-32
Identities = 60/87 (68%), Positives = 72/87 (82%)
Frame = +1
Query: 16 AKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCK 195
AKRTKKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C
Sbjct: 2 AKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCM 61
Query: 196 KVIAGGAYTHITTAAVTARAHIRRVNE 276
K +AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 62 KTVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a
Length = 92
Score = 133 bits (335), Expect = 1e-31
Identities = 59/87 (67%), Positives = 73/87 (83%)
Frame = +1
Query: 16 AKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCK 195
AKRTKKVGIVGKYGTR+G+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C
Sbjct: 2 AKRTKKVGIVGKYGTRFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCM 61
Query: 196 KVIAGGAYTHITTAAVTARAHIRRVNE 276
K++AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 62 KIVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43
Length = 92
Score = 133 bits (335), Expect = 1e-31
Identities = 58/87 (66%), Positives = 70/87 (80%)
Frame = +1
Query: 16 AKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCK 195
AKRTKKVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKKA+KR GIW+C CK
Sbjct: 2 AKRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCK 61
Query: 196 KVIAGGAYTHITTAAVTARAHIRRVNE 276
K +AGGAYT T AA T R+ IRR+ E
Sbjct: 62 KTVAGGAYTFSTAAAATVRSTIRRLRE 88
>sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a
sp|P61515|RL37A_RAT 60S ribosomal protein L37a
sp|P61514|RL37A_MOUSE 60S ribosomal protein L37a
Length = 92
Score = 132 bits (333), Expect = 2e-31
Identities = 59/87 (67%), Positives = 72/87 (82%)
Frame = +1
Query: 16 AKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCK 195
AKRTKKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C
Sbjct: 2 AKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCM 61
Query: 196 KVIAGGAYTHITTAAVTARAHIRRVNE 276
K +AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 62 KTVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|O61462|RL37A_CRYST 60S ribosomal protein L37a
Length = 92
Score = 131 bits (330), Expect = 4e-31
Identities = 58/87 (66%), Positives = 72/87 (82%)
Frame = +1
Query: 16 AKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCK 195
AKRTKKVGIVGKYGTRYG+S+RK +KK+EI H+KY C FCGK A+KR+ VGIW CK C+
Sbjct: 2 AKRTKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCR 61
Query: 196 KVIAGGAYTHITTAAVTARAHIRRVNE 276
KV+AGGA+ + T AAVT R+ +RR+ E
Sbjct: 62 KVVAGGAWVYSTMAAVTVRSAVRRLRE 88
>sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a
Length = 92
Score = 131 bits (330), Expect = 4e-31
Identities = 58/87 (66%), Positives = 72/87 (82%)
Frame = +1
Query: 16 AKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCK 195
AKRTKKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C
Sbjct: 2 AKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCM 61
Query: 196 KVIAGGAYTHITTAAVTARAHIRRVNE 276
K +AGGA+T+ TT+AVT ++ I+R+ E
Sbjct: 62 KTVAGGAWTYNTTSAVTVKSAIKRLKE 88
>sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35)
Length = 92
Score = 129 bits (324), Expect = 2e-30
Identities = 58/87 (66%), Positives = 68/87 (78%)
Frame = +1
Query: 16 AKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCK 195
AKRTKKVGI GKYG RYGSS+R+ +KK+EIQ HA+YDC+FCGKK +KR GIW C CK
Sbjct: 2 AKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCK 61
Query: 196 KVIAGGAYTHITTAAVTARAHIRRVNE 276
K +AGGAYT T AA T R+ IRR+ E
Sbjct: 62 KTVAGGAYTVSTAAAATVRSTIRRLRE 88
>sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43
Length = 92
Score = 127 bits (320), Expect = 6e-30
Identities = 55/87 (63%), Positives = 68/87 (78%)
Frame = +1
Query: 16 AKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCK 195
AKRTKKVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKK ++R GIW C CK
Sbjct: 2 AKRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSCK 61
Query: 196 KVIAGGAYTHITTAAVTARAHIRRVNE 276
K +AGGAYT T AA T R+ IRR+ +
Sbjct: 62 KTVAGGAYTVSTAAAATVRSTIRRLRD 88
>sp|P43209|RL37A_BRARA 60S ribosomal protein L37a
Length = 93
Score = 127 bits (320), Expect = 6e-30
Identities = 62/88 (70%), Positives = 70/88 (79%), Gaps = 1/88 (1%)
Frame = +1
Query: 16 AKRTKKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCK 195
AKRTKKVGIVGKYGTRYG+SIRK IKK+E+ H+KY C FCGK +KRK VGIW CK C
Sbjct: 2 AKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCG 61
Query: 196 KVIAGGAYTHITTAAVTARAH-IRRVNE 276
KV AGGAYT T +AVT R+H IRR+ E
Sbjct: 62 KVKAGGAYTMNTASAVTVRSHTIRRLRE 89
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,352,904
Number of Sequences: 369166
Number of extensions: 511585
Number of successful extensions: 1879
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1870
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)