Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_O16
(147 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a 55 6e-08
sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a 54 8e-08
sp|P32046|RL37A_CHICK 60S ribosomal protein L37a 54 1e-07
sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a >gi|476064... 54 1e-07
sp|O61462|RL37A_CRYST 60S ribosomal protein L37a 53 2e-07
sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43 52 3e-07
sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a 52 3e-07
sp|Q9Y0H7|RL37A_MYXGL 60S ribosomal protein L37a 52 4e-07
sp|Q9SRK6|RL37A_ARATH 60S ribosomal protein L37a 50 1e-06
sp|Q9VMU4|RL37A_DROME 60S ribosomal protein L37 50 1e-06
>sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a
Length = 92
Score = 54.7 bits (130), Expect = 6e-08
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +1
Query: 1 VGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 111
VGIWHC C K++AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 52 VGIWHCGSCMKIVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a
Length = 91
Score = 54.3 bits (129), Expect = 8e-08
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = +1
Query: 4 GIWHCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 111
GIW CK CKKV+AGGAY TTAA T RA IRR+ +
Sbjct: 52 GIWECKACKKVVAGGAYVCSTTAATTIRAAIRRLRD 87
>sp|P32046|RL37A_CHICK 60S ribosomal protein L37a
Length = 92
Score = 53.5 bits (127), Expect = 1e-07
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +1
Query: 1 VGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 111
VGIWHC C K +AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 52 VGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a
sp|P61515|RL37A_RAT 60S ribosomal protein L37a
sp|P61514|RL37A_MOUSE 60S ribosomal protein L37a
Length = 92
Score = 53.5 bits (127), Expect = 1e-07
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +1
Query: 1 VGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 111
VGIWHC C K +AGGA+T+ TT+AVT ++ IRR+ E
Sbjct: 52 VGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88
>sp|O61462|RL37A_CRYST 60S ribosomal protein L37a
Length = 92
Score = 53.1 bits (126), Expect = 2e-07
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +1
Query: 1 VGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 111
VGIW CK C+KV+AGGA+ + T AAVT R+ +RR+ E
Sbjct: 52 VGIWGCKSCRKVVAGGAWVYSTMAAVTVRSAVRRLRE 88
>sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43
Length = 92
Score = 52.4 bits (124), Expect = 3e-07
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +1
Query: 4 GIWHCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 111
GIW+C CKK +AGGAYT T AA T R+ IRR+ E
Sbjct: 53 GIWNCSSCKKTVAGGAYTFSTAAAATVRSTIRRLRE 88
>sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a
Length = 92
Score = 52.4 bits (124), Expect = 3e-07
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = +1
Query: 1 VGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 111
VGIWHC C K +AGGA+T+ TT+AVT ++ I+R+ E
Sbjct: 52 VGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIKRLKE 88
>sp|Q9Y0H7|RL37A_MYXGL 60S ribosomal protein L37a
Length = 85
Score = 52.0 bits (123), Expect = 4e-07
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = +1
Query: 1 VGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 111
VGIWHC C K +AGGA+T+ T++AVT ++ IRR+ E
Sbjct: 45 VGIWHCGSCMKTVAGGAWTYNTSSAVTVKSAIRRLRE 81
>sp|Q9SRK6|RL37A_ARATH 60S ribosomal protein L37a
Length = 92
Score = 50.4 bits (119), Expect = 1e-06
Identities = 24/37 (64%), Positives = 27/37 (72%)
Frame = +1
Query: 1 VGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 111
VGIW CK C KV AGGAYT T +AVT R+ IRR+ E
Sbjct: 52 VGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLRE 88
>sp|Q9VMU4|RL37A_DROME 60S ribosomal protein L37
Length = 92
Score = 50.4 bits (119), Expect = 1e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 1 VGIWHCKGCKKVIAGGAYTHITTAAVTARAHIRRVNE 111
VGIW CK CK+ +AGGA+ + TTAA + R+ +RR+ E
Sbjct: 52 VGIWSCKRCKRTVAGGAWVYSTTAAASVRSAVRRLRE 88
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,247,661
Number of Sequences: 369166
Number of extensions: 116162
Number of successful extensions: 333
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 68,354,980
effective HSP length: 22
effective length of database: 64,290,810
effective search space used: 1671561060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)