Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_D03
(285 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a 130 7e-31
sp|P32046|RL37A_CHICK 60S ribosomal protein L37a 126 1e-29
sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a 126 2e-29
sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43 126 2e-29
sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a >gi|476064... 125 3e-29
sp|O61462|RL37A_CRYST 60S ribosomal protein L37a 124 7e-29
sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a 124 7e-29
sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35) 122 3e-28
sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43 120 1e-27
sp|P43209|RL37A_BRARA 60S ribosomal protein L37a 120 1e-27
>sp|O17307|RL37A_SCHMA 60S ribosomal protein L37a
Length = 91
Score = 130 bits (328), Expect = 7e-31
Identities = 60/83 (72%), Positives = 67/83 (80%)
Frame = +1
Query: 1 KKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIA 180
KKVGIVGKYG RYG+S+RK IKKIEI HAKY+CNFCGK +LKRK GIW CK CKKV+A
Sbjct: 5 KKVGIVGKYGVRYGASLRKTIKKIEISQHAKYNCNFCGKDSLKRKAAGIWECKACKKVVA 64
Query: 181 GGAYTHITTAAVTARAHIRRVNE 249
GGAY TTAA T RA IRR+ +
Sbjct: 65 GGAYVCSTTAATTIRAAIRRLRD 87
>sp|P32046|RL37A_CHICK 60S ribosomal protein L37a
Length = 92
Score = 126 bits (317), Expect = 1e-29
Identities = 56/83 (67%), Positives = 68/83 (81%)
Frame = +1
Query: 1 KKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIA 180
KKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K +A
Sbjct: 6 KKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKTVA 65
Query: 181 GGAYTHITTAAVTARAHIRRVNE 249
GGA+T+ TT+AVT ++ IRR+ E
Sbjct: 66 GGAWTYNTTSAVTVKSAIRRLKE 88
>sp|Q7SZB4|RL37A_XENLA 60S ribosomal protein L37a
Length = 92
Score = 126 bits (316), Expect = 2e-29
Identities = 55/83 (66%), Positives = 69/83 (83%)
Frame = +1
Query: 1 KKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIA 180
KKVGIVGKYGTR+G+S+RK +KKIEI HAKY C+FCGK +KRK VGIWHC C K++A
Sbjct: 6 KKVGIVGKYGTRFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKIVA 65
Query: 181 GGAYTHITTAAVTARAHIRRVNE 249
GGA+T+ TT+AVT ++ IRR+ E
Sbjct: 66 GGAWTYNTTSAVTVKSAIRRLKE 88
>sp|Q751L1|RL43_ASHGO 60S ribosomal protein L43
Length = 92
Score = 126 bits (316), Expect = 2e-29
Identities = 54/83 (65%), Positives = 66/83 (79%)
Frame = +1
Query: 1 KKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIA 180
KKVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKKA+KR GIW+C CKK +A
Sbjct: 6 KKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKKTVA 65
Query: 181 GGAYTHITTAAVTARAHIRRVNE 249
GGAYT T AA T R+ IRR+ E
Sbjct: 66 GGAYTFSTAAAATVRSTIRRLRE 88
>sp|P61513|RL37A_HUMAN 60S ribosomal protein L37a
sp|P61515|RL37A_RAT 60S ribosomal protein L37a
sp|P61514|RL37A_MOUSE 60S ribosomal protein L37a
Length = 92
Score = 125 bits (314), Expect = 3e-29
Identities = 55/83 (66%), Positives = 68/83 (81%)
Frame = +1
Query: 1 KKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIA 180
KKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K +A
Sbjct: 6 KKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVA 65
Query: 181 GGAYTHITTAAVTARAHIRRVNE 249
GGA+T+ TT+AVT ++ IRR+ E
Sbjct: 66 GGAWTYNTTSAVTVKSAIRRLKE 88
>sp|O61462|RL37A_CRYST 60S ribosomal protein L37a
Length = 92
Score = 124 bits (311), Expect = 7e-29
Identities = 54/83 (65%), Positives = 68/83 (81%)
Frame = +1
Query: 1 KKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIA 180
KKVGIVGKYGTRYG+S+RK +KK+EI H+KY C FCGK A+KR+ VGIW CK C+KV+A
Sbjct: 6 KKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVA 65
Query: 181 GGAYTHITTAAVTARAHIRRVNE 249
GGA+ + T AAVT R+ +RR+ E
Sbjct: 66 GGAWVYSTMAAVTVRSAVRRLRE 88
>sp|Q90YT0|RL37A_ICTPU 60S ribosomal protein L37a
Length = 92
Score = 124 bits (311), Expect = 7e-29
Identities = 54/83 (65%), Positives = 68/83 (81%)
Frame = +1
Query: 1 KKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIA 180
KKVGIVGKYGTRYG+S+RK +KKIEI HAKY C+FCGK +KR+ VGIWHC C K +A
Sbjct: 6 KKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVA 65
Query: 181 GGAYTHITTAAVTARAHIRRVNE 249
GGA+T+ TT+AVT ++ I+R+ E
Sbjct: 66 GGAWTYNTTSAVTVKSAIKRLKE 88
>sp|P49631|RL43_YEAST 60S ribosomal protein L43 (L37A) (YL35)
Length = 92
Score = 122 bits (305), Expect = 3e-28
Identities = 54/83 (65%), Positives = 64/83 (77%)
Frame = +1
Query: 1 KKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIA 180
KKVGI GKYG RYGSS+R+ +KK+EIQ HA+YDC+FCGKK +KR GIW C CKK +A
Sbjct: 6 KKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVA 65
Query: 181 GGAYTHITTAAVTARAHIRRVNE 249
GGAYT T AA T R+ IRR+ E
Sbjct: 66 GGAYTVSTAAAATVRSTIRRLRE 88
>sp|Q6FRG6|RL43_CANGA 60S ribosomal protein L43
Length = 92
Score = 120 bits (301), Expect = 1e-27
Identities = 51/83 (61%), Positives = 64/83 (77%)
Frame = +1
Query: 1 KKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIA 180
KKVGI GKYG RYGSS+R+ +KK+E+Q HA+YDC+FCGKK ++R GIW C CKK +A
Sbjct: 6 KKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKTVRRGAAGIWSCHSCKKTVA 65
Query: 181 GGAYTHITTAAVTARAHIRRVNE 249
GGAYT T AA T R+ IRR+ +
Sbjct: 66 GGAYTVSTAAAATVRSTIRRLRD 88
>sp|P43209|RL37A_BRARA 60S ribosomal protein L37a
Length = 93
Score = 120 bits (301), Expect = 1e-27
Identities = 58/84 (69%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 KKVGIVGKYGTRYGSSIRKNIKKIEIQSHAKYDCNFCGKKALKRKCVGIWHCKGCKKVIA 180
KKVGIVGKYGTRYG+SIRK IKK+E+ H+KY C FCGK +KRK VGIW CK C KV A
Sbjct: 6 KKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKA 65
Query: 181 GGAYTHITTAAVTARAH-IRRVNE 249
GGAYT T +AVT R+H IRR+ E
Sbjct: 66 GGAYTMNTASAVTVRSHTIRRLRE 89
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,779,077
Number of Sequences: 369166
Number of extensions: 471432
Number of successful extensions: 1606
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1597
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)