Planaria EST Database

DrC_00918

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00918
         (680 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46782|RS5_HUMAN  40S ribosomal protein S5 >gi|71153729|s...   282   5e-76
sp|P97461|RS5_MOUSE  40S ribosomal protein S5                     280   2e-75
sp|P24050|RS5_RAT  40S ribosomal protein S5                       277   2e-74
sp|Q24186|RS5A_DROME  40S ribosomal protein S5a                   271   9e-73
sp|P49041|RS5_CAEEL  40S ribosomal protein S5                     265   8e-71
sp|Q9VFE4|RS5B_DROME  40S ribosomal protein S5b                   262   5e-70
sp|Q08364|RS5_PODCA  40S ribosomal protein S5                     261   9e-70
sp|Q9ZUT9|RS5A_ARATH  40S ribosomal protein S5-1                  253   3e-67
sp|P51427|RS5B_ARATH  40S ribosomal protein S5-2                  251   1e-66
sp|O65731|RS5_CICAR  40S ribosomal protein S5                     249   4e-66

>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
 sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
          Length = 204

 Score =  282 bits (722), Expect = 5e-76
 Identities = 141/194 (72%), Positives = 157/194 (80%)
 Frame = +3

Query: 15  IMDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVE 194
           + +T D KLF KWST+DV   D+SL DYI    KYAK +PHSAGRY  KRFRKAQCPIVE
Sbjct: 11  VAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVE 70

Query: 195 RFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGR 374
           R   S+MMHGR             HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR
Sbjct: 71  RLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGR 130

Query: 375 GGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAI 554
            G V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAI
Sbjct: 131 AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAI 190

Query: 555 KKKDELERVAKSNR 596
           KKKDELERVAKSNR
Sbjct: 191 KKKDELERVAKSNR 204

>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
          Length = 204

 Score =  280 bits (717), Expect = 2e-75
 Identities = 140/194 (72%), Positives = 156/194 (80%)
 Frame = +3

Query: 15  IMDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVE 194
           + +T D KLF KWST+DV   D+SL DYI    KYAK +PHSAGRY  KRFRKAQCPIVE
Sbjct: 11  VAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVE 70

Query: 195 RFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGR 374
           R   S+MMHGR             HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR
Sbjct: 71  RLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGR 130

Query: 375 GGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAI 554
            G V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN K IAECL+DELINA+KGSSNSYAI
Sbjct: 131 AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAI 190

Query: 555 KKKDELERVAKSNR 596
           KKKDELERVAKSNR
Sbjct: 191 KKKDELERVAKSNR 204

>sp|P24050|RS5_RAT 40S ribosomal protein S5
          Length = 204

 Score =  277 bits (708), Expect = 2e-74
 Identities = 139/194 (71%), Positives = 154/194 (79%)
 Frame = +3

Query: 15  IMDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVE 194
           + +T D KLF KWST+DV   D+SL DYI    KYAK +PHSAGRY    FRKAQCPIVE
Sbjct: 11  VAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANGFRKAQCPIVE 70

Query: 195 RFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGR 374
           R   S+MMHGR             HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR
Sbjct: 71  RLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGR 130

Query: 375 GGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAI 554
            G V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA KGSSNSYAI
Sbjct: 131 AGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAI 190

Query: 555 KKKDELERVAKSNR 596
           KKKDELERVAKSNR
Sbjct: 191 KKKDELERVAKSNR 204

>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
          Length = 228

 Score =  271 bits (694), Expect = 9e-73
 Identities = 134/189 (70%), Positives = 154/189 (81%)
 Frame = +3

Query: 30  DFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACS 209
           + KLF +WS +DV   D+SL DYI+   K+A+ +PHSAGRY  KRFRKAQCPIVER  CS
Sbjct: 40  EIKLFGRWSCDDVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCS 99

Query: 210 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 389
           LMM GR             H+FE+IHL+TGENP+Q++V+AI NSG REDSTRIGR G V+
Sbjct: 100 LMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGpreDSTRIGRAGTVR 159

Query: 390 RQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDE 569
           RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDE
Sbjct: 160 RQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE 219

Query: 570 LERVAKSNR 596
           LERVAKSNR
Sbjct: 220 LERVAKSNR 228

>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
          Length = 210

 Score =  265 bits (677), Expect = 8e-71
 Identities = 132/192 (68%), Positives = 154/192 (80%)
 Frame = +3

Query: 21  DTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 200
           +  +  LF KWS + V+ +D+SL DYI    K AK +PHSAGR+Q +RFRKA CPIVER 
Sbjct: 19  EAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERL 78

Query: 201 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 380
           A SLMMHGR             HAFE+I+L+TGENP+Q++VNA+ NSG REDSTRIGR G
Sbjct: 79  ANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGpreDSTRIGRAG 138

Query: 381 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 560
            V+RQAVDV+PLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKK
Sbjct: 139 TVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKK 198

Query: 561 KDELERVAKSNR 596
           KDELERVAKSNR
Sbjct: 199 KDELERVAKSNR 210

>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
          Length = 230

 Score =  262 bits (670), Expect = 5e-70
 Identities = 129/194 (66%), Positives = 152/194 (78%)
 Frame = +3

Query: 15  IMDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVE 194
           + +  + KLF +W+ +D+  +D+SL DYI    K+A+ +PHSAGRY  KRFRKAQCPIVE
Sbjct: 37  VTEWPEIKLFGRWACDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVE 96

Query: 195 RFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGR 374
           R    LMM GR             HAFE+IHL+T ENP+Q+ VNAI NSG REDSTRIGR
Sbjct: 97  RLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGpreDSTRIGR 156

Query: 375 GGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAI 554
            G V+RQAVDVSPLRRVN+AI L+CTGAREA+FRN KT+AECL+DELINA+KGSSNSYAI
Sbjct: 157 AGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAI 216

Query: 555 KKKDELERVAKSNR 596
           KKKDELERVAKSNR
Sbjct: 217 KKKDELERVAKSNR 230

>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
          Length = 210

 Score =  261 bits (668), Expect = 9e-70
 Identities = 130/193 (67%), Positives = 152/193 (78%)
 Frame = +3

Query: 18  MDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVER 197
           ++  D KLF KW  E ++ +D+SLTDYI     +A  +PH+A RY  KRFRKAQCPIVER
Sbjct: 18  IEVQDIKLFGKWPLEGLNISDISLTDYIAVKDNHAVYLPHTAARYAVKRFRKAQCPIVER 77

Query: 198 FACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRG 377
              SLMMHGR             H+FE++HL+TGENP+QL+  AISNSG REDSTRIGR 
Sbjct: 78  LTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGpreDSTRIGRA 137

Query: 378 GAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIK 557
           G V+RQAVDV+PLRRVN+AI LLCTGAREASFRN K+IAECL+DELINA++GSSNSYAIK
Sbjct: 138 GTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIK 197

Query: 558 KKDELERVAKSNR 596
           KKDELERVAKSNR
Sbjct: 198 KKDELERVAKSNR 210

>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
          Length = 207

 Score =  253 bits (646), Expect = 3e-67
 Identities = 127/192 (66%), Positives = 151/192 (78%), Gaps = 1/192 (0%)
 Frame = +3

Query: 24  TSDFKLFNKWSTEDVHTTDLSLTDYINYS-GKYAKIIPHSAGRYQTKRFRKAQCPIVERF 200
           T++ KLFN+WS +DV  TD+SL DYI     K+A  +PH+AGRY  KRFRKAQCPIVER 
Sbjct: 16  TNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERL 75

Query: 201 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 380
             SLMMHGR             HA E+IHL++  NPIQ++++AI NSG RED+TRIG  G
Sbjct: 76  TNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAG 135

Query: 381 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 560
            V+RQAVD+SPLRRVN+AI LL TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKK
Sbjct: 136 VVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKK 195

Query: 561 KDELERVAKSNR 596
           KDE+ERVAK+NR
Sbjct: 196 KDEIERVAKANR 207

>sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2
          Length = 207

 Score =  251 bits (641), Expect = 1e-66
 Identities = 125/192 (65%), Positives = 152/192 (79%), Gaps = 1/192 (0%)
 Frame = +3

Query: 24  TSDFKLFNKWSTEDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 200
           T++ KLFN+W+ +DV  TD+SL DYI   + K+A  +PH+AGRY  KRFRKAQCPIVER 
Sbjct: 16  TNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERL 75

Query: 201 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 380
             SLMMHGR             HA E+IHL++  NPIQ++++AI NSG RED+TRIG  G
Sbjct: 76  TNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAG 135

Query: 381 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 560
            V+RQAVD+SPLRRVN+AI L+ TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKK
Sbjct: 136 VVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKK 195

Query: 561 KDELERVAKSNR 596
           KDE+ERVAK+NR
Sbjct: 196 KDEIERVAKANR 207

>sp|O65731|RS5_CICAR 40S ribosomal protein S5
          Length = 197

 Score =  249 bits (637), Expect = 4e-66
 Identities = 125/190 (65%), Positives = 150/190 (78%), Gaps = 1/190 (0%)
 Frame = +3

Query: 30  DFKLFNKWSTEDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFAC 206
           + KLFN+WS +DV  +D+SL DYI     K+A  +PH+AGRY  KRFRKAQCPIVER   
Sbjct: 8   EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67

Query: 207 SLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAV 386
           SLMMHGR             HA E+IHL+T +NPIQ++V+A+ NSG RED+TRIG  G V
Sbjct: 68  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGpreDATRIGSAGVV 127

Query: 387 KRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKD 566
           +RQAVD+SPLRRVN+AI LL TGAREA+FRN K+IAECL+DELINA+KGSSNSYAIKKKD
Sbjct: 128 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKD 187

Query: 567 ELERVAKSNR 596
           E+ERVAK+NR
Sbjct: 188 EIERVAKANR 197

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,758,960
Number of Sequences: 369166
Number of extensions: 1260195
Number of successful extensions: 3334
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3227
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00918

  1. Dr_sW_023_C12
  2. Dr_sW_028_H17
  3. Dr_sW_021_M23
  4. Dr_sW_013_K11
  5. Dr_sW_026_M16
  6. Dr_sW_004_C08
  7. Dr_sW_012_K10
  8. Dr_sW_017_M13
  9. Dr_sW_004_M08
  10. Dr_sW_001_D05
  11. Dr_sW_024_G20
  12. Dr_sW_023_L06
  13. Dr_sW_019_G24
  14. Dr_sW_015_M08
  15. Dr_sW_012_H18