Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_K11
(614 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46782|RS5_HUMAN 40S ribosomal protein S5 >gi|71153729|s... 281 7e-76
sp|P97461|RS5_MOUSE 40S ribosomal protein S5 280 3e-75
sp|P24050|RS5_RAT 40S ribosomal protein S5 276 3e-74
sp|Q24186|RS5A_DROME 40S ribosomal protein S5a 271 7e-73
sp|P49041|RS5_CAEEL 40S ribosomal protein S5 265 7e-71
sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b 262 6e-70
sp|Q08364|RS5_PODCA 40S ribosomal protein S5 261 8e-70
sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1 253 3e-67
sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2 251 1e-66
sp|O65731|RS5_CICAR 40S ribosomal protein S5 249 3e-66
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
Length = 204
Score = 281 bits (720), Expect = 7e-76
Identities = 141/192 (73%), Positives = 156/192 (81%)
Frame = +2
Query: 5 DTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 184
+T D KLF KWST+DV D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVER
Sbjct: 13 ETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERL 72
Query: 185 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 364
S+MMHGR HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G
Sbjct: 73 TNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAG 132
Query: 365 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 544
V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKK
Sbjct: 133 TVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKK 192
Query: 545 KDELERVAKSNR 580
KDELERVAKSNR
Sbjct: 193 KDELERVAKSNR 204
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
Length = 204
Score = 280 bits (715), Expect = 3e-75
Identities = 140/192 (72%), Positives = 155/192 (80%)
Frame = +2
Query: 5 DTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 184
+T D KLF KWST+DV D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVER
Sbjct: 13 ETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERL 72
Query: 185 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 364
S+MMHGR HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G
Sbjct: 73 TNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAG 132
Query: 365 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 544
V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN K IAECL+DELINA+KGSSNSYAIKK
Sbjct: 133 TVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKK 192
Query: 545 KDELERVAKSNR 580
KDELERVAKSNR
Sbjct: 193 KDELERVAKSNR 204
>sp|P24050|RS5_RAT 40S ribosomal protein S5
Length = 204
Score = 276 bits (706), Expect = 3e-74
Identities = 139/192 (72%), Positives = 153/192 (79%)
Frame = +2
Query: 5 DTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 184
+T D KLF KWST+DV D+SL DYI KYAK +PHSAGRY FRKAQCPIVER
Sbjct: 13 ETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANGFRKAQCPIVERL 72
Query: 185 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 364
S+MMHGR HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G
Sbjct: 73 TNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAG 132
Query: 365 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 544
V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA KGSSNSYAIKK
Sbjct: 133 TVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKK 192
Query: 545 KDELERVAKSNR 580
KDELERVAKSNR
Sbjct: 193 KDELERVAKSNR 204
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
Length = 228
Score = 271 bits (694), Expect = 7e-73
Identities = 134/189 (70%), Positives = 154/189 (81%)
Frame = +2
Query: 14 DFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACS 193
+ KLF +WS +DV D+SL DYI+ K+A+ +PHSAGRY KRFRKAQCPIVER CS
Sbjct: 40 EIKLFGRWSCDDVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCS 99
Query: 194 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 373
LMM GR H+FE+IHL+TGENP+Q++V+AI NSG REDSTRIGR G V+
Sbjct: 100 LMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGpreDSTRIGRAGTVR 159
Query: 374 RQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDE 553
RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDE
Sbjct: 160 RQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE 219
Query: 554 LERVAKSNR 580
LERVAKSNR
Sbjct: 220 LERVAKSNR 228
>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
Length = 210
Score = 265 bits (677), Expect = 7e-71
Identities = 132/192 (68%), Positives = 154/192 (80%)
Frame = +2
Query: 5 DTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 184
+ + LF KWS + V+ +D+SL DYI K AK +PHSAGR+Q +RFRKA CPIVER
Sbjct: 19 EAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERL 78
Query: 185 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 364
A SLMMHGR HAFE+I+L+TGENP+Q++VNA+ NSG REDSTRIGR G
Sbjct: 79 ANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGpreDSTRIGRAG 138
Query: 365 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 544
V+RQAVDV+PLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKK
Sbjct: 139 TVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKK 198
Query: 545 KDELERVAKSNR 580
KDELERVAKSNR
Sbjct: 199 KDELERVAKSNR 210
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
Length = 230
Score = 262 bits (669), Expect = 6e-70
Identities = 129/189 (68%), Positives = 150/189 (79%)
Frame = +2
Query: 14 DFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACS 193
+ KLF +W+ +D+ +D+SL DYI K+A+ +PHSAGRY KRFRKAQCPIVER
Sbjct: 42 EIKLFGRWACDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTSG 101
Query: 194 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 373
LMM GR HAFE+IHL+T ENP+Q+ VNAI NSG REDSTRIGR G V+
Sbjct: 102 LMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGpreDSTRIGRAGTVR 161
Query: 374 RQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDE 553
RQAVDVSPLRRVN+AI L+CTGAREA+FRN KT+AECL+DELINA+KGSSNSYAIKKKDE
Sbjct: 162 RQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDE 221
Query: 554 LERVAKSNR 580
LERVAKSNR
Sbjct: 222 LERVAKSNR 230
>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
Length = 210
Score = 261 bits (668), Expect = 8e-70
Identities = 130/193 (67%), Positives = 152/193 (78%)
Frame = +2
Query: 2 MDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVER 181
++ D KLF KW E ++ +D+SLTDYI +A +PH+A RY KRFRKAQCPIVER
Sbjct: 18 IEVQDIKLFGKWPLEGLNISDISLTDYIAVKDNHAVYLPHTAARYAVKRFRKAQCPIVER 77
Query: 182 FACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRG 361
SLMMHGR H+FE++HL+TGENP+QL+ AISNSG REDSTRIGR
Sbjct: 78 LTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGpreDSTRIGRA 137
Query: 362 GAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIK 541
G V+RQAVDV+PLRRVN+AI LLCTGAREASFRN K+IAECL+DELINA++GSSNSYAIK
Sbjct: 138 GTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIK 197
Query: 542 KKDELERVAKSNR 580
KKDELERVAKSNR
Sbjct: 198 KKDELERVAKSNR 210
>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
Length = 207
Score = 253 bits (646), Expect = 3e-67
Identities = 127/192 (66%), Positives = 151/192 (78%), Gaps = 1/192 (0%)
Frame = +2
Query: 8 TSDFKLFNKWSTEDVHTTDLSLTDYINYS-GKYAKIIPHSAGRYQTKRFRKAQCPIVERF 184
T++ KLFN+WS +DV TD+SL DYI K+A +PH+AGRY KRFRKAQCPIVER
Sbjct: 16 TNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERL 75
Query: 185 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 364
SLMMHGR HA E+IHL++ NPIQ++++AI NSG RED+TRIG G
Sbjct: 76 TNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAG 135
Query: 365 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 544
V+RQAVD+SPLRRVN+AI LL TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKK
Sbjct: 136 VVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKK 195
Query: 545 KDELERVAKSNR 580
KDE+ERVAK+NR
Sbjct: 196 KDEIERVAKANR 207
>sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2
Length = 207
Score = 251 bits (641), Expect = 1e-66
Identities = 125/192 (65%), Positives = 152/192 (79%), Gaps = 1/192 (0%)
Frame = +2
Query: 8 TSDFKLFNKWSTEDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 184
T++ KLFN+W+ +DV TD+SL DYI + K+A +PH+AGRY KRFRKAQCPIVER
Sbjct: 16 TNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERL 75
Query: 185 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 364
SLMMHGR HA E+IHL++ NPIQ++++AI NSG RED+TRIG G
Sbjct: 76 TNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAG 135
Query: 365 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 544
V+RQAVD+SPLRRVN+AI L+ TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKK
Sbjct: 136 VVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKK 195
Query: 545 KDELERVAKSNR 580
KDE+ERVAK+NR
Sbjct: 196 KDEIERVAKANR 207
>sp|O65731|RS5_CICAR 40S ribosomal protein S5
Length = 197
Score = 249 bits (637), Expect = 3e-66
Identities = 125/190 (65%), Positives = 150/190 (78%), Gaps = 1/190 (0%)
Frame = +2
Query: 14 DFKLFNKWSTEDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFAC 190
+ KLFN+WS +DV +D+SL DYI K+A +PH+AGRY KRFRKAQCPIVER
Sbjct: 8 EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67
Query: 191 SLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAV 370
SLMMHGR HA E+IHL+T +NPIQ++V+A+ NSG RED+TRIG G V
Sbjct: 68 SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGpreDATRIGSAGVV 127
Query: 371 KRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKD 550
+RQAVD+SPLRRVN+AI LL TGAREA+FRN K+IAECL+DELINA+KGSSNSYAIKKKD
Sbjct: 128 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKD 187
Query: 551 ELERVAKSNR 580
E+ERVAK+NR
Sbjct: 188 EIERVAKANR 197
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,144,368
Number of Sequences: 369166
Number of extensions: 1187538
Number of successful extensions: 3243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3136
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)