Planarian EST Database


Dr_sW_013_K11

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_013_K11
         (614 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46782|RS5_HUMAN  40S ribosomal protein S5 >gi|71153729|s...   281   7e-76
sp|P97461|RS5_MOUSE  40S ribosomal protein S5                     280   3e-75
sp|P24050|RS5_RAT  40S ribosomal protein S5                       276   3e-74
sp|Q24186|RS5A_DROME  40S ribosomal protein S5a                   271   7e-73
sp|P49041|RS5_CAEEL  40S ribosomal protein S5                     265   7e-71
sp|Q9VFE4|RS5B_DROME  40S ribosomal protein S5b                   262   6e-70
sp|Q08364|RS5_PODCA  40S ribosomal protein S5                     261   8e-70
sp|Q9ZUT9|RS5A_ARATH  40S ribosomal protein S5-1                  253   3e-67
sp|P51427|RS5B_ARATH  40S ribosomal protein S5-2                  251   1e-66
sp|O65731|RS5_CICAR  40S ribosomal protein S5                     249   3e-66
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
 sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
          Length = 204

 Score =  281 bits (720), Expect = 7e-76
 Identities = 141/192 (73%), Positives = 156/192 (81%)
 Frame = +2

Query: 5   DTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 184
           +T D KLF KWST+DV   D+SL DYI    KYAK +PHSAGRY  KRFRKAQCPIVER 
Sbjct: 13  ETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERL 72

Query: 185 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 364
             S+MMHGR             HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G
Sbjct: 73  TNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAG 132

Query: 365 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 544
            V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKK
Sbjct: 133 TVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKK 192

Query: 545 KDELERVAKSNR 580
           KDELERVAKSNR
Sbjct: 193 KDELERVAKSNR 204
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
          Length = 204

 Score =  280 bits (715), Expect = 3e-75
 Identities = 140/192 (72%), Positives = 155/192 (80%)
 Frame = +2

Query: 5   DTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 184
           +T D KLF KWST+DV   D+SL DYI    KYAK +PHSAGRY  KRFRKAQCPIVER 
Sbjct: 13  ETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERL 72

Query: 185 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 364
             S+MMHGR             HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G
Sbjct: 73  TNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAG 132

Query: 365 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 544
            V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN K IAECL+DELINA+KGSSNSYAIKK
Sbjct: 133 TVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKK 192

Query: 545 KDELERVAKSNR 580
           KDELERVAKSNR
Sbjct: 193 KDELERVAKSNR 204
>sp|P24050|RS5_RAT 40S ribosomal protein S5
          Length = 204

 Score =  276 bits (706), Expect = 3e-74
 Identities = 139/192 (72%), Positives = 153/192 (79%)
 Frame = +2

Query: 5   DTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 184
           +T D KLF KWST+DV   D+SL DYI    KYAK +PHSAGRY    FRKAQCPIVER 
Sbjct: 13  ETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANGFRKAQCPIVERL 72

Query: 185 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 364
             S+MMHGR             HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G
Sbjct: 73  TNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAG 132

Query: 365 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 544
            V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA KGSSNSYAIKK
Sbjct: 133 TVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKK 192

Query: 545 KDELERVAKSNR 580
           KDELERVAKSNR
Sbjct: 193 KDELERVAKSNR 204
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
          Length = 228

 Score =  271 bits (694), Expect = 7e-73
 Identities = 134/189 (70%), Positives = 154/189 (81%)
 Frame = +2

Query: 14  DFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACS 193
           + KLF +WS +DV   D+SL DYI+   K+A+ +PHSAGRY  KRFRKAQCPIVER  CS
Sbjct: 40  EIKLFGRWSCDDVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCS 99

Query: 194 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 373
           LMM GR             H+FE+IHL+TGENP+Q++V+AI NSG REDSTRIGR G V+
Sbjct: 100 LMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGpreDSTRIGRAGTVR 159

Query: 374 RQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDE 553
           RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDE
Sbjct: 160 RQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE 219

Query: 554 LERVAKSNR 580
           LERVAKSNR
Sbjct: 220 LERVAKSNR 228
>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
          Length = 210

 Score =  265 bits (677), Expect = 7e-71
 Identities = 132/192 (68%), Positives = 154/192 (80%)
 Frame = +2

Query: 5   DTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 184
           +  +  LF KWS + V+ +D+SL DYI    K AK +PHSAGR+Q +RFRKA CPIVER 
Sbjct: 19  EAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERL 78

Query: 185 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 364
           A SLMMHGR             HAFE+I+L+TGENP+Q++VNA+ NSG REDSTRIGR G
Sbjct: 79  ANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGpreDSTRIGRAG 138

Query: 365 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 544
            V+RQAVDV+PLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKK
Sbjct: 139 TVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKK 198

Query: 545 KDELERVAKSNR 580
           KDELERVAKSNR
Sbjct: 199 KDELERVAKSNR 210
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
          Length = 230

 Score =  262 bits (669), Expect = 6e-70
 Identities = 129/189 (68%), Positives = 150/189 (79%)
 Frame = +2

Query: 14  DFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACS 193
           + KLF +W+ +D+  +D+SL DYI    K+A+ +PHSAGRY  KRFRKAQCPIVER    
Sbjct: 42  EIKLFGRWACDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTSG 101

Query: 194 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 373
           LMM GR             HAFE+IHL+T ENP+Q+ VNAI NSG REDSTRIGR G V+
Sbjct: 102 LMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGpreDSTRIGRAGTVR 161

Query: 374 RQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDE 553
           RQAVDVSPLRRVN+AI L+CTGAREA+FRN KT+AECL+DELINA+KGSSNSYAIKKKDE
Sbjct: 162 RQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDE 221

Query: 554 LERVAKSNR 580
           LERVAKSNR
Sbjct: 222 LERVAKSNR 230
>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
          Length = 210

 Score =  261 bits (668), Expect = 8e-70
 Identities = 130/193 (67%), Positives = 152/193 (78%)
 Frame = +2

Query: 2   MDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVER 181
           ++  D KLF KW  E ++ +D+SLTDYI     +A  +PH+A RY  KRFRKAQCPIVER
Sbjct: 18  IEVQDIKLFGKWPLEGLNISDISLTDYIAVKDNHAVYLPHTAARYAVKRFRKAQCPIVER 77

Query: 182 FACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRG 361
              SLMMHGR             H+FE++HL+TGENP+QL+  AISNSG REDSTRIGR 
Sbjct: 78  LTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGpreDSTRIGRA 137

Query: 362 GAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIK 541
           G V+RQAVDV+PLRRVN+AI LLCTGAREASFRN K+IAECL+DELINA++GSSNSYAIK
Sbjct: 138 GTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIK 197

Query: 542 KKDELERVAKSNR 580
           KKDELERVAKSNR
Sbjct: 198 KKDELERVAKSNR 210
>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
          Length = 207

 Score =  253 bits (646), Expect = 3e-67
 Identities = 127/192 (66%), Positives = 151/192 (78%), Gaps = 1/192 (0%)
 Frame = +2

Query: 8   TSDFKLFNKWSTEDVHTTDLSLTDYINYS-GKYAKIIPHSAGRYQTKRFRKAQCPIVERF 184
           T++ KLFN+WS +DV  TD+SL DYI     K+A  +PH+AGRY  KRFRKAQCPIVER 
Sbjct: 16  TNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERL 75

Query: 185 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 364
             SLMMHGR             HA E+IHL++  NPIQ++++AI NSG RED+TRIG  G
Sbjct: 76  TNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAG 135

Query: 365 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 544
            V+RQAVD+SPLRRVN+AI LL TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKK
Sbjct: 136 VVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKK 195

Query: 545 KDELERVAKSNR 580
           KDE+ERVAK+NR
Sbjct: 196 KDEIERVAKANR 207
>sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2
          Length = 207

 Score =  251 bits (641), Expect = 1e-66
 Identities = 125/192 (65%), Positives = 152/192 (79%), Gaps = 1/192 (0%)
 Frame = +2

Query: 8   TSDFKLFNKWSTEDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 184
           T++ KLFN+W+ +DV  TD+SL DYI   + K+A  +PH+AGRY  KRFRKAQCPIVER 
Sbjct: 16  TNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERL 75

Query: 185 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 364
             SLMMHGR             HA E+IHL++  NPIQ++++AI NSG RED+TRIG  G
Sbjct: 76  TNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAG 135

Query: 365 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 544
            V+RQAVD+SPLRRVN+AI L+ TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKK
Sbjct: 136 VVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKK 195

Query: 545 KDELERVAKSNR 580
           KDE+ERVAK+NR
Sbjct: 196 KDEIERVAKANR 207
>sp|O65731|RS5_CICAR 40S ribosomal protein S5
          Length = 197

 Score =  249 bits (637), Expect = 3e-66
 Identities = 125/190 (65%), Positives = 150/190 (78%), Gaps = 1/190 (0%)
 Frame = +2

Query: 14  DFKLFNKWSTEDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFAC 190
           + KLFN+WS +DV  +D+SL DYI     K+A  +PH+AGRY  KRFRKAQCPIVER   
Sbjct: 8   EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67

Query: 191 SLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAV 370
           SLMMHGR             HA E+IHL+T +NPIQ++V+A+ NSG RED+TRIG  G V
Sbjct: 68  SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGpreDATRIGSAGVV 127

Query: 371 KRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKD 550
           +RQAVD+SPLRRVN+AI LL TGAREA+FRN K+IAECL+DELINA+KGSSNSYAIKKKD
Sbjct: 128 RRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKD 187

Query: 551 ELERVAKSNR 580
           E+ERVAK+NR
Sbjct: 188 EIERVAKANR 197
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,144,368
Number of Sequences: 369166
Number of extensions: 1187538
Number of successful extensions: 3243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3136
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4846822695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)