Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_H17
(290 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46782|RS5_HUMAN 40S ribosomal protein S5 >gi|71153729|s... 118 4e-27
sp|P97461|RS5_MOUSE 40S ribosomal protein S5 118 4e-27
sp|P24050|RS5_RAT 40S ribosomal protein S5 114 9e-26
sp|Q24186|RS5A_DROME 40S ribosomal protein S5a 109 2e-24
sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1 103 9e-23
sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2 102 2e-22
sp|P49041|RS5_CAEEL 40S ribosomal protein S5 102 3e-22
sp|Q08364|RS5_PODCA 40S ribosomal protein S5 101 5e-22
sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b 100 8e-22
sp|O65731|RS5_CICAR 40S ribosomal protein S5 100 1e-21
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
Length = 204
Score = 118 bits (296), Expect = 4e-27
Identities = 56/95 (58%), Positives = 64/95 (67%)
Frame = +1
Query: 4 IMDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVE 183
+ +T D KLF KWST+DV D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVE
Sbjct: 11 VAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVE 70
Query: 184 RFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTG 288
R S+MMHGR HAFE+IHL+TG
Sbjct: 71 RLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTG 105
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
Length = 204
Score = 118 bits (296), Expect = 4e-27
Identities = 56/95 (58%), Positives = 64/95 (67%)
Frame = +1
Query: 4 IMDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVE 183
+ +T D KLF KWST+DV D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVE
Sbjct: 11 VAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVE 70
Query: 184 RFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTG 288
R S+MMHGR HAFE+IHL+TG
Sbjct: 71 RLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTG 105
>sp|P24050|RS5_RAT 40S ribosomal protein S5
Length = 204
Score = 114 bits (284), Expect = 9e-26
Identities = 54/95 (56%), Positives = 62/95 (65%)
Frame = +1
Query: 4 IMDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVE 183
+ +T D KLF KWST+DV D+SL DYI KYAK +PHSAGRY FRKAQCPIVE
Sbjct: 11 VAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANGFRKAQCPIVE 70
Query: 184 RFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTG 288
R S+MMHGR HAFE+IHL+TG
Sbjct: 71 RLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTG 105
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
Length = 228
Score = 109 bits (272), Expect = 2e-24
Identities = 50/90 (55%), Positives = 61/90 (67%)
Frame = +1
Query: 19 DFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACS 198
+ KLF +WS +DV D+SL DYI+ K+A+ +PHSAGRY KRFRKAQCPIVER CS
Sbjct: 40 EIKLFGRWSCDDVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCS 99
Query: 199 LMMHGRXXXXXXXXXXXXXHAFELIHLMTG 288
LMM GR H+FE+IHL+TG
Sbjct: 100 LMMKGRNNGKKLMACRIVKHSFEIIHLLTG 129
>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
Length = 207
Score = 103 bits (258), Expect = 9e-23
Identities = 50/92 (54%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Frame = +1
Query: 13 TSDFKLFNKWSTEDVHTTDLSLTDYINYS-GKYAKIIPHSAGRYQTKRFRKAQCPIVERF 189
T++ KLFN+WS +DV TD+SL DYI K+A +PH+AGRY KRFRKAQCPIVER
Sbjct: 16 TNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERL 75
Query: 190 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMT 285
SLMMHGR HA E+IHL++
Sbjct: 76 TNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLS 107
>sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2
Length = 207
Score = 102 bits (255), Expect = 2e-22
Identities = 49/92 (53%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Frame = +1
Query: 13 TSDFKLFNKWSTEDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 189
T++ KLFN+W+ +DV TD+SL DYI + K+A +PH+AGRY KRFRKAQCPIVER
Sbjct: 16 TNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERL 75
Query: 190 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMT 285
SLMMHGR HA E+IHL++
Sbjct: 76 TNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLS 107
>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
Length = 210
Score = 102 bits (254), Expect = 3e-22
Identities = 49/93 (52%), Positives = 61/93 (65%)
Frame = +1
Query: 10 DTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 189
+ + LF KWS + V+ +D+SL DYI K AK +PHSAGR+Q +RFRKA CPIVER
Sbjct: 19 EAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERL 78
Query: 190 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTG 288
A SLMMHGR HAFE+I+L+TG
Sbjct: 79 ANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTG 111
>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
Length = 210
Score = 101 bits (252), Expect = 5e-22
Identities = 47/94 (50%), Positives = 60/94 (63%)
Frame = +1
Query: 7 MDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVER 186
++ D KLF KW E ++ +D+SLTDYI +A +PH+A RY KRFRKAQCPIVER
Sbjct: 18 IEVQDIKLFGKWPLEGLNISDISLTDYIAVKDNHAVYLPHTAARYAVKRFRKAQCPIVER 77
Query: 187 FACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTG 288
SLMMHGR H+FE++HL+TG
Sbjct: 78 LTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTG 111
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
Length = 230
Score = 100 bits (250), Expect = 8e-22
Identities = 46/94 (48%), Positives = 60/94 (63%)
Frame = +1
Query: 4 IMDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVE 183
+ + + KLF +W+ +D+ +D+SL DYI K+A+ +PHSAGRY KRFRKAQCPIVE
Sbjct: 37 VTEWPEIKLFGRWACDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVE 96
Query: 184 RFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMT 285
R LMM GR HAFE+IHL+T
Sbjct: 97 RLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLT 130
>sp|O65731|RS5_CICAR 40S ribosomal protein S5
Length = 197
Score = 100 bits (248), Expect = 1e-21
Identities = 49/90 (54%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Frame = +1
Query: 19 DFKLFNKWSTEDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFAC 195
+ KLFN+WS +DV +D+SL DYI K+A +PH+AGRY KRFRKAQCPIVER
Sbjct: 8 EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67
Query: 196 SLMMHGRXXXXXXXXXXXXXHAFELIHLMT 285
SLMMHGR HA E+IHL+T
Sbjct: 68 SLMMHGRNNGKKLMAVRIIKHAMEIIHLLT 97
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,389,846
Number of Sequences: 369166
Number of extensions: 467514
Number of successful extensions: 1083
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 68,354,980
effective HSP length: 66
effective length of database: 56,162,470
effective search space used: 1684874100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)