Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_C12
(233 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46782|RS5_HUMAN 40S ribosomal protein S5 >gi|71153729|s... 102 2e-22
sp|P97461|RS5_MOUSE 40S ribosomal protein S5 102 2e-22
sp|P24050|RS5_RAT 40S ribosomal protein S5 98 5e-21
sp|Q24186|RS5A_DROME 40S ribosomal protein S5a 95 6e-20
sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1 94 8e-20
sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2 93 2e-19
sp|P49041|RS5_CAEEL 40S ribosomal protein S5 89 3e-18
sp|O65731|RS5_CICAR 40S ribosomal protein S5 89 3e-18
sp|Q08364|RS5_PODCA 40S ribosomal protein S5 88 5e-18
sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b 87 9e-18
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
Length = 204
Score = 102 bits (255), Expect = 2e-22
Identities = 47/71 (66%), Positives = 53/71 (74%)
Frame = +3
Query: 15 IMDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVE 194
+ +T D KLF KWST+DV D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVE
Sbjct: 11 VAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVE 70
Query: 195 RFACSLMMHGR 227
R S+MMHGR
Sbjct: 71 RLTNSMMMHGR 81
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
Length = 204
Score = 102 bits (255), Expect = 2e-22
Identities = 47/71 (66%), Positives = 53/71 (74%)
Frame = +3
Query: 15 IMDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVE 194
+ +T D KLF KWST+DV D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVE
Sbjct: 11 VAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVE 70
Query: 195 RFACSLMMHGR 227
R S+MMHGR
Sbjct: 71 RLTNSMMMHGR 81
>sp|P24050|RS5_RAT 40S ribosomal protein S5
Length = 204
Score = 98.2 bits (243), Expect = 5e-21
Identities = 45/71 (63%), Positives = 51/71 (71%)
Frame = +3
Query: 15 IMDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVE 194
+ +T D KLF KWST+DV D+SL DYI KYAK +PHSAGRY FRKAQCPIVE
Sbjct: 11 VAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANGFRKAQCPIVE 70
Query: 195 RFACSLMMHGR 227
R S+MMHGR
Sbjct: 71 RLTNSMMMHGR 81
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
Length = 228
Score = 94.7 bits (234), Expect = 6e-20
Identities = 42/66 (63%), Positives = 50/66 (75%)
Frame = +3
Query: 30 DFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACS 209
+ KLF +WS +DV D+SL DYI+ K+A+ +PHSAGRY KRFRKAQCPIVER CS
Sbjct: 40 EIKLFGRWSCDDVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCS 99
Query: 210 LMMHGR 227
LMM GR
Sbjct: 100 LMMKGR 105
>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
Length = 207
Score = 94.4 bits (233), Expect = 8e-20
Identities = 44/69 (63%), Positives = 52/69 (75%), Gaps = 1/69 (1%)
Frame = +3
Query: 24 TSDFKLFNKWSTEDVHTTDLSLTDYINYS-GKYAKIIPHSAGRYQTKRFRKAQCPIVERF 200
T++ KLFN+WS +DV TD+SL DYI K+A +PH+AGRY KRFRKAQCPIVER
Sbjct: 16 TNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERL 75
Query: 201 ACSLMMHGR 227
SLMMHGR
Sbjct: 76 TNSLMMHGR 84
>sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2
Length = 207
Score = 93.2 bits (230), Expect = 2e-19
Identities = 43/69 (62%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Frame = +3
Query: 24 TSDFKLFNKWSTEDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 200
T++ KLFN+W+ +DV TD+SL DYI + K+A +PH+AGRY KRFRKAQCPIVER
Sbjct: 16 TNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERL 75
Query: 201 ACSLMMHGR 227
SLMMHGR
Sbjct: 76 TNSLMMHGR 84
>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
Length = 210
Score = 89.0 bits (219), Expect = 3e-18
Identities = 41/69 (59%), Positives = 50/69 (72%)
Frame = +3
Query: 21 DTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 200
+ + LF KWS + V+ +D+SL DYI K AK +PHSAGR+Q +RFRKA CPIVER
Sbjct: 19 EAPEVALFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERL 78
Query: 201 ACSLMMHGR 227
A SLMMHGR
Sbjct: 79 ANSLMMHGR 87
>sp|O65731|RS5_CICAR 40S ribosomal protein S5
Length = 197
Score = 89.0 bits (219), Expect = 3e-18
Identities = 42/67 (62%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Frame = +3
Query: 30 DFKLFNKWSTEDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFAC 206
+ KLFN+WS +DV +D+SL DYI K+A +PH+AGRY KRFRKAQCPIVER
Sbjct: 8 EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67
Query: 207 SLMMHGR 227
SLMMHGR
Sbjct: 68 SLMMHGR 74
>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
Length = 210
Score = 88.2 bits (217), Expect = 5e-18
Identities = 40/70 (57%), Positives = 49/70 (70%)
Frame = +3
Query: 18 MDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVER 197
++ D KLF KW E ++ +D+SLTDYI +A +PH+A RY KRFRKAQCPIVER
Sbjct: 18 IEVQDIKLFGKWPLEGLNISDISLTDYIAVKDNHAVYLPHTAARYAVKRFRKAQCPIVER 77
Query: 198 FACSLMMHGR 227
SLMMHGR
Sbjct: 78 LTNSLMMHGR 87
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
Length = 230
Score = 87.4 bits (215), Expect = 9e-18
Identities = 38/71 (53%), Positives = 50/71 (70%)
Frame = +3
Query: 15 IMDTSDFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVE 194
+ + + KLF +W+ +D+ +D+SL DYI K+A+ +PHSAGRY KRFRKAQCPIVE
Sbjct: 37 VTEWPEIKLFGRWACDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVE 96
Query: 195 RFACSLMMHGR 227
R LMM GR
Sbjct: 97 RLTSGLMMKGR 107
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,918,256
Number of Sequences: 369166
Number of extensions: 405583
Number of successful extensions: 1062
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 68,354,980
effective HSP length: 48
effective length of database: 59,487,700
effective search space used: 1725143300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)