Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_G24
(536 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46782|RS5_HUMAN 40S ribosomal protein S5 >gi|71153729|s... 251 6e-67
sp|P97461|RS5_MOUSE 40S ribosomal protein S5 249 2e-66
sp|Q24186|RS5A_DROME 40S ribosomal protein S5a 249 3e-66
sp|P24050|RS5_RAT 40S ribosomal protein S5 246 3e-65
sp|P49041|RS5_CAEEL 40S ribosomal protein S5 244 1e-64
sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b 241 1e-63
sp|Q08364|RS5_PODCA 40S ribosomal protein S5 236 2e-62
sp|O65731|RS5_CICAR 40S ribosomal protein S5 225 5e-59
sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1 224 1e-58
sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2 224 1e-58
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
Length = 204
Score = 251 bits (642), Expect = 6e-67
Identities = 127/168 (75%), Positives = 139/168 (82%)
Frame = +1
Query: 1 DYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHA 180
DYI KYAK +PHSAGRY KRFRKAQCPIVER S+MMHGR HA
Sbjct: 37 DYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHA 96
Query: 181 FELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCT 360
FE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCT
Sbjct: 97 FEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCT 156
Query: 361 GAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 504
GAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 157 GAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
Length = 204
Score = 249 bits (637), Expect = 2e-66
Identities = 126/168 (75%), Positives = 138/168 (82%)
Frame = +1
Query: 1 DYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHA 180
DYI KYAK +PHSAGRY KRFRKAQCPIVER S+MMHGR HA
Sbjct: 37 DYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHA 96
Query: 181 FELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCT 360
FE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCT
Sbjct: 97 FEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCT 156
Query: 361 GAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 504
GAREA+FRN K IAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 157 GAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
Length = 228
Score = 249 bits (636), Expect = 3e-66
Identities = 124/168 (73%), Positives = 140/168 (83%)
Frame = +1
Query: 1 DYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHA 180
DYI+ K+A+ +PHSAGRY KRFRKAQCPIVER CSLMM GR H+
Sbjct: 61 DYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHS 120
Query: 181 FELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCT 360
FE+IHL+TGENP+Q++V+AI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCT
Sbjct: 121 FEIIHLLTGENPLQILVSAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCT 180
Query: 361 GAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 504
GAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 181 GAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228
>sp|P24050|RS5_RAT 40S ribosomal protein S5
Length = 204
Score = 246 bits (628), Expect = 3e-65
Identities = 125/168 (74%), Positives = 136/168 (80%)
Frame = +1
Query: 1 DYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHA 180
DYI KYAK +PHSAGRY FRKAQCPIVER S+MMHGR HA
Sbjct: 37 DYIAVKEKYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHA 96
Query: 181 FELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCT 360
FE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCT
Sbjct: 97 FEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCT 156
Query: 361 GAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 504
GAREA+FRN KTIAECL+DELINA KGSSNSYAIKKKDELERVAKSNR
Sbjct: 157 GAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELERVAKSNR 204
>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
Length = 210
Score = 244 bits (623), Expect = 1e-64
Identities = 123/168 (73%), Positives = 139/168 (82%)
Frame = +1
Query: 1 DYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHA 180
DYI K AK +PHSAGR+Q +RFRKA CPIVER A SLMMHGR HA
Sbjct: 43 DYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHA 102
Query: 181 FELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCT 360
FE+I+L+TGENP+Q++VNA+ NSG REDSTRIGR G V+RQAVDV+PLRRVN+AI LLCT
Sbjct: 103 FEIIYLLTGENPVQVLVNAVINSGpreDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCT 162
Query: 361 GAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 504
GAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 163 GAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
Length = 230
Score = 241 bits (614), Expect = 1e-63
Identities = 121/168 (72%), Positives = 135/168 (80%)
Frame = +1
Query: 1 DYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHA 180
DYI K+A+ +PHSAGRY KRFRKAQCPIVER LMM GR HA
Sbjct: 63 DYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTSGLMMKGRSNGKKLLACRIVKHA 122
Query: 181 FELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCT 360
FE+IHL+T ENP+Q+ VNAI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI L+CT
Sbjct: 123 FEIIHLLTSENPLQVTVNAIVNSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICT 182
Query: 361 GAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 504
GAREA+FRN KT+AECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 183 GAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230
>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
Length = 210
Score = 236 bits (603), Expect = 2e-62
Identities = 119/168 (70%), Positives = 135/168 (80%)
Frame = +1
Query: 1 DYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHA 180
DYI +A +PH+A RY KRFRKAQCPIVER SLMMHGR H+
Sbjct: 43 DYIAVKDNHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHS 102
Query: 181 FELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCT 360
FE++HL+TGENP+QL+ AISNSG REDSTRIGR G V+RQAVDV+PLRRVN+AI LLCT
Sbjct: 103 FEIMHLLTGENPLQLVCEAISNSGpreDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCT 162
Query: 361 GAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 504
GAREASFRN K+IAECL+DELINA++GSSNSYAIKKKDELERVAKSNR
Sbjct: 163 GAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDELERVAKSNR 210
>sp|O65731|RS5_CICAR 40S ribosomal protein S5
Length = 197
Score = 225 bits (574), Expect = 5e-59
Identities = 114/169 (67%), Positives = 134/169 (79%), Gaps = 1/169 (0%)
Frame = +1
Query: 1 DYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXH 177
DYI K+A +PH+AGRY KRFRKAQCPIVER SLMMHGR H
Sbjct: 29 DYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKH 88
Query: 178 AFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLC 357
A E+IHL+T +NPIQ++V+A+ NSG RED+TRIG G V+RQAVD+SPLRRVN+AI LL
Sbjct: 89 AMEIIHLLTDQNPIQVIVDAVVNSGpreDATRIGSAGVVRRQAVDISPLRRVNQAIYLLT 148
Query: 358 TGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 504
TGAREA+FRN K+IAECL+DELINA+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 149 TGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197
>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
Length = 207
Score = 224 bits (571), Expect = 1e-58
Identities = 114/169 (67%), Positives = 133/169 (78%), Gaps = 1/169 (0%)
Frame = +1
Query: 1 DYINYS-GKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXH 177
DYI K+A +PH+AGRY KRFRKAQCPIVER SLMMHGR H
Sbjct: 39 DYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKH 98
Query: 178 AFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLC 357
A E+IHL++ NPIQ++++AI NSG RED+TRIG G V+RQAVD+SPLRRVN+AI LL
Sbjct: 99 AMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVVRRQAVDISPLRRVNQAIFLLT 158
Query: 358 TGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 504
TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 159 TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
>sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2
Length = 207
Score = 224 bits (570), Expect = 1e-58
Identities = 113/169 (66%), Positives = 134/169 (79%), Gaps = 1/169 (0%)
Frame = +1
Query: 1 DYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXH 177
DYI + K+A +PH+AGRY KRFRKAQCPIVER SLMMHGR H
Sbjct: 39 DYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKH 98
Query: 178 AFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLC 357
A E+IHL++ NPIQ++++AI NSG RED+TRIG G V+RQAVD+SPLRRVN+AI L+
Sbjct: 99 AMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVVRRQAVDISPLRRVNQAIFLIT 158
Query: 358 TGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 504
TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 159 TGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,585,999
Number of Sequences: 369166
Number of extensions: 1005199
Number of successful extensions: 2810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2729
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)