Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_M08
(565 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46782|RS5_HUMAN 40S ribosomal protein S5 >gi|71153729|s... 258 5e-69
sp|P97461|RS5_MOUSE 40S ribosomal protein S5 256 2e-68
sp|Q24186|RS5A_DROME 40S ribosomal protein S5a 256 4e-68
sp|P24050|RS5_RAT 40S ribosomal protein S5 253 2e-67
sp|P49041|RS5_CAEEL 40S ribosomal protein S5 253 3e-67
sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b 247 1e-65
sp|Q08364|RS5_PODCA 40S ribosomal protein S5 245 5e-65
sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1 233 2e-61
sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2 233 3e-61
sp|O65731|RS5_CICAR 40S ribosomal protein S5 232 4e-61
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
Length = 204
Score = 258 bits (660), Expect = 5e-69
Identities = 131/177 (74%), Positives = 144/177 (81%)
Frame = +3
Query: 3 VHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXX 182
V D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVER S+MMHGR
Sbjct: 28 VQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKL 87
Query: 183 XXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRV 362
HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQAVDVSPLRRV
Sbjct: 88 MTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRV 147
Query: 363 NKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 533
N+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 148 NQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
Length = 204
Score = 256 bits (655), Expect = 2e-68
Identities = 130/177 (73%), Positives = 143/177 (80%)
Frame = +3
Query: 3 VHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXX 182
V D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVER S+MMHGR
Sbjct: 28 VQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKL 87
Query: 183 XXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRV 362
HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQAVDVSPLRRV
Sbjct: 88 MTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRV 147
Query: 363 NKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 533
N+AI LLCTGAREA+FRN K IAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 148 NQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
Length = 228
Score = 256 bits (653), Expect = 4e-68
Identities = 128/177 (72%), Positives = 145/177 (81%)
Frame = +3
Query: 3 VHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXX 182
V D+SL DYI+ K+A+ +PHSAGRY KRFRKAQCPIVER CSLMM GR
Sbjct: 52 VTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKL 111
Query: 183 XXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRV 362
H+FE+IHL+TGENP+Q++V+AI NSG REDSTRIGR G V+RQAVDVSPLRRV
Sbjct: 112 MACRIVKHSFEIIHLLTGENPLQILVSAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRV 171
Query: 363 NKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 533
N+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 172 NQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228
>sp|P24050|RS5_RAT 40S ribosomal protein S5
Length = 204
Score = 253 bits (646), Expect = 2e-67
Identities = 129/177 (72%), Positives = 141/177 (79%)
Frame = +3
Query: 3 VHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXX 182
V D+SL DYI KYAK +PHSAGRY FRKAQCPIVER S+MMHGR
Sbjct: 28 VQINDISLQDYIAVKEKYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKL 87
Query: 183 XXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRV 362
HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQAVDVSPLRRV
Sbjct: 88 MTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRV 147
Query: 363 NKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 533
N+AI LLCTGAREA+FRN KTIAECL+DELINA KGSSNSYAIKKKDELERVAKSNR
Sbjct: 148 NQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELERVAKSNR 204
>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
Length = 210
Score = 253 bits (645), Expect = 3e-67
Identities = 127/177 (71%), Positives = 146/177 (82%)
Frame = +3
Query: 3 VHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXX 182
V+ +D+SL DYI K AK +PHSAGR+Q +RFRKA CPIVER A SLMMHGR
Sbjct: 34 VNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKL 93
Query: 183 XXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRV 362
HAFE+I+L+TGENP+Q++VNA+ NSG REDSTRIGR G V+RQAVDV+PLRRV
Sbjct: 94 MTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGpreDSTRIGRAGTVRRQAVDVAPLRRV 153
Query: 363 NKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 533
N+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 154 NQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
Length = 230
Score = 247 bits (631), Expect = 1e-65
Identities = 124/177 (70%), Positives = 141/177 (79%)
Frame = +3
Query: 3 VHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXX 182
+ +D+SL DYI K+A+ +PHSAGRY KRFRKAQCPIVER LMM GR
Sbjct: 54 ISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTSGLMMKGRSNGKKL 113
Query: 183 XXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRV 362
HAFE+IHL+T ENP+Q+ VNAI NSG REDSTRIGR G V+RQAVDVSPLRRV
Sbjct: 114 LACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGpreDSTRIGRAGTVRRQAVDVSPLRRV 173
Query: 363 NKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 533
N+AI L+CTGAREA+FRN KT+AECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 174 NQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230
>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
Length = 210
Score = 245 bits (626), Expect = 5e-65
Identities = 123/177 (69%), Positives = 143/177 (80%)
Frame = +3
Query: 3 VHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXX 182
++ +D+SLTDYI +A +PH+A RY KRFRKAQCPIVER SLMMHGR
Sbjct: 34 LNISDISLTDYIAVKDNHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKL 93
Query: 183 XXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRV 362
H+FE++HL+TGENP+QL+ AISNSG REDSTRIGR G V+RQAVDV+PLRRV
Sbjct: 94 MAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGpreDSTRIGRAGTVRRQAVDVAPLRRV 153
Query: 363 NKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 533
N+AI LLCTGAREASFRN K+IAECL+DELINA++GSSNSYAIKKKDELERVAKSNR
Sbjct: 154 NQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDELERVAKSNR 210
>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
Length = 207
Score = 233 bits (595), Expect = 2e-61
Identities = 119/178 (66%), Positives = 139/178 (78%), Gaps = 1/178 (0%)
Frame = +3
Query: 3 VHTTDLSLTDYINYS-GKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXX 179
V TD+SL DYI K+A +PH+AGRY KRFRKAQCPIVER SLMMHGR
Sbjct: 30 VSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKK 89
Query: 180 XXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRR 359
HA E+IHL++ NPIQ++++AI NSG RED+TRIG G V+RQAVD+SPLRR
Sbjct: 90 LMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVVRRQAVDISPLRR 149
Query: 360 VNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 533
VN+AI LL TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 150 VNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
>sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2
Length = 207
Score = 233 bits (593), Expect = 3e-61
Identities = 118/178 (66%), Positives = 140/178 (78%), Gaps = 1/178 (0%)
Frame = +3
Query: 3 VHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXX 179
V TD+SL DYI + K+A +PH+AGRY KRFRKAQCPIVER SLMMHGR
Sbjct: 30 VTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKK 89
Query: 180 XXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRR 359
HA E+IHL++ NPIQ++++AI NSG RED+TRIG G V+RQAVD+SPLRR
Sbjct: 90 LMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVVRRQAVDISPLRR 149
Query: 360 VNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 533
VN+AI L+ TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 150 VNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
>sp|O65731|RS5_CICAR 40S ribosomal protein S5
Length = 197
Score = 232 bits (592), Expect = 4e-61
Identities = 118/178 (66%), Positives = 140/178 (78%), Gaps = 1/178 (0%)
Frame = +3
Query: 3 VHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXX 179
V +D+SL DYI K+A +PH+AGRY KRFRKAQCPIVER SLMMHGR
Sbjct: 20 VQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKK 79
Query: 180 XXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRR 359
HA E+IHL+T +NPIQ++V+A+ NSG RED+TRIG G V+RQAVD+SPLRR
Sbjct: 80 LMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGpreDATRIGSAGVVRRQAVDISPLRR 139
Query: 360 VNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 533
VN+AI LL TGAREA+FRN K+IAECL+DELINA+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 140 VNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,452,462
Number of Sequences: 369166
Number of extensions: 1066346
Number of successful extensions: 2897
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2815
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)