Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_H18
(668 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46782|RS5_HUMAN 40S ribosomal protein S5 >gi|71153729|s... 279 4e-75
sp|P97461|RS5_MOUSE 40S ribosomal protein S5 277 2e-74
sp|P24050|RS5_RAT 40S ribosomal protein S5 274 2e-73
sp|Q24186|RS5A_DROME 40S ribosomal protein S5a 271 9e-73
sp|P49041|RS5_CAEEL 40S ribosomal protein S5 265 1e-70
sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b 262 7e-70
sp|Q08364|RS5_PODCA 40S ribosomal protein S5 260 2e-69
sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1 251 2e-66
sp|O65731|RS5_CICAR 40S ribosomal protein S5 250 3e-66
sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2 249 6e-66
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
Length = 204
Score = 279 bits (714), Expect = 4e-75
Identities = 140/189 (74%), Positives = 154/189 (81%)
Frame = +3
Query: 18 DFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACS 197
D KLF KWST+DV D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVER S
Sbjct: 16 DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNS 75
Query: 198 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 377
+MMHGR HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+
Sbjct: 76 MMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVR 135
Query: 378 RQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDE 557
RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDE
Sbjct: 136 RQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE 195
Query: 558 LERVAKSNR 584
LERVAKSNR
Sbjct: 196 LERVAKSNR 204
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
Length = 204
Score = 277 bits (709), Expect = 2e-74
Identities = 139/189 (73%), Positives = 153/189 (80%)
Frame = +3
Query: 18 DFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACS 197
D KLF KWST+DV D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVER S
Sbjct: 16 DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNS 75
Query: 198 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 377
+MMHGR HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+
Sbjct: 76 MMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVR 135
Query: 378 RQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDE 557
RQAVDVSPLRRVN+AI LLCTGAREA+FRN K IAECL+DELINA+KGSSNSYAIKKKDE
Sbjct: 136 RQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDE 195
Query: 558 LERVAKSNR 584
LERVAKSNR
Sbjct: 196 LERVAKSNR 204
>sp|P24050|RS5_RAT 40S ribosomal protein S5
Length = 204
Score = 274 bits (700), Expect = 2e-73
Identities = 138/189 (73%), Positives = 151/189 (79%)
Frame = +3
Query: 18 DFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACS 197
D KLF KWST+DV D+SL DYI KYAK +PHSAGRY FRKAQCPIVER S
Sbjct: 16 DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANGFRKAQCPIVERLTNS 75
Query: 198 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 377
+MMHGR HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+
Sbjct: 76 MMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVR 135
Query: 378 RQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDE 557
RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA KGSSNSYAIKKKDE
Sbjct: 136 RQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDE 195
Query: 558 LERVAKSNR 584
LERVAKSNR
Sbjct: 196 LERVAKSNR 204
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
Length = 228
Score = 271 bits (694), Expect = 9e-73
Identities = 134/189 (70%), Positives = 154/189 (81%)
Frame = +3
Query: 18 DFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACS 197
+ KLF +WS +DV D+SL DYI+ K+A+ +PHSAGRY KRFRKAQCPIVER CS
Sbjct: 40 EIKLFGRWSCDDVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCS 99
Query: 198 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 377
LMM GR H+FE+IHL+TGENP+Q++V+AI NSG REDSTRIGR G V+
Sbjct: 100 LMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGpreDSTRIGRAGTVR 159
Query: 378 RQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDE 557
RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDE
Sbjct: 160 RQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE 219
Query: 558 LERVAKSNR 584
LERVAKSNR
Sbjct: 220 LERVAKSNR 228
>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
Length = 210
Score = 265 bits (676), Expect = 1e-70
Identities = 132/186 (70%), Positives = 152/186 (81%)
Frame = +3
Query: 27 LFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMM 206
LF KWS + V+ +D+SL DYI K AK +PHSAGR+Q +RFRKA CPIVER A SLMM
Sbjct: 25 LFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMM 84
Query: 207 HGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQA 386
HGR HAFE+I+L+TGENP+Q++VNA+ NSG REDSTRIGR G V+RQA
Sbjct: 85 HGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGpreDSTRIGRAGTVRRQA 144
Query: 387 VDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELER 566
VDV+PLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELER
Sbjct: 145 VDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELER 204
Query: 567 VAKSNR 584
VAKSNR
Sbjct: 205 VAKSNR 210
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
Length = 230
Score = 262 bits (669), Expect = 7e-70
Identities = 129/189 (68%), Positives = 150/189 (79%)
Frame = +3
Query: 18 DFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACS 197
+ KLF +W+ +D+ +D+SL DYI K+A+ +PHSAGRY KRFRKAQCPIVER
Sbjct: 42 EIKLFGRWACDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTSG 101
Query: 198 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 377
LMM GR HAFE+IHL+T ENP+Q+ VNAI NSG REDSTRIGR G V+
Sbjct: 102 LMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGpreDSTRIGRAGTVR 161
Query: 378 RQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDE 557
RQAVDVSPLRRVN+AI L+CTGAREA+FRN KT+AECL+DELINA+KGSSNSYAIKKKDE
Sbjct: 162 RQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDE 221
Query: 558 LERVAKSNR 584
LERVAKSNR
Sbjct: 222 LERVAKSNR 230
>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
Length = 210
Score = 260 bits (665), Expect = 2e-69
Identities = 130/189 (68%), Positives = 150/189 (79%)
Frame = +3
Query: 18 DFKLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACS 197
D KLF KW E ++ +D+SLTDYI +A +PH+A RY KRFRKAQCPIVER S
Sbjct: 22 DIKLFGKWPLEGLNISDISLTDYIAVKDNHAVYLPHTAARYAVKRFRKAQCPIVERLTNS 81
Query: 198 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 377
LMMHGR H+FE++HL+TGENP+QL+ AISNSG REDSTRIGR G V+
Sbjct: 82 LMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGpreDSTRIGRAGTVR 141
Query: 378 RQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDE 557
RQAVDV+PLRRVN+AI LLCTGAREASFRN K+IAECL+DELINA++GSSNSYAIKKKDE
Sbjct: 142 RQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDE 201
Query: 558 LERVAKSNR 584
LERVAKSNR
Sbjct: 202 LERVAKSNR 210
>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
Length = 207
Score = 251 bits (640), Expect = 2e-66
Identities = 126/190 (66%), Positives = 149/190 (78%), Gaps = 1/190 (0%)
Frame = +3
Query: 18 DFKLFNKWSTEDVHTTDLSLTDYINYS-GKYAKIIPHSAGRYQTKRFRKAQCPIVERFAC 194
+ KLFN+WS +DV TD+SL DYI K+A +PH+AGRY KRFRKAQCPIVER
Sbjct: 18 EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77
Query: 195 SLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAV 374
SLMMHGR HA E+IHL++ NPIQ++++AI NSG RED+TRIG G V
Sbjct: 78 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVV 137
Query: 375 KRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKD 554
+RQAVD+SPLRRVN+AI LL TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKD
Sbjct: 138 RRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
Query: 555 ELERVAKSNR 584
E+ERVAK+NR
Sbjct: 198 EIERVAKANR 207
>sp|O65731|RS5_CICAR 40S ribosomal protein S5
Length = 197
Score = 250 bits (638), Expect = 3e-66
Identities = 125/192 (65%), Positives = 151/192 (78%), Gaps = 1/192 (0%)
Frame = +3
Query: 12 EADFKLFNKWSTEDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERF 188
+ + KLFN+WS +DV +D+SL DYI K+A +PH+AGRY KRFRKAQCPIVER
Sbjct: 6 QIEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERL 65
Query: 189 ACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGG 368
SLMMHGR HA E+IHL+T +NPIQ++V+A+ NSG RED+TRIG G
Sbjct: 66 TNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGpreDATRIGSAG 125
Query: 369 AVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKK 548
V+RQAVD+SPLRRVN+AI LL TGAREA+FRN K+IAECL+DELINA+KGSSNSYAIKK
Sbjct: 126 VVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKK 185
Query: 549 KDELERVAKSNR 584
KDE+ERVAK+NR
Sbjct: 186 KDEIERVAKANR 197
>sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2
Length = 207
Score = 249 bits (635), Expect = 6e-66
Identities = 124/190 (65%), Positives = 150/190 (78%), Gaps = 1/190 (0%)
Frame = +3
Query: 18 DFKLFNKWSTEDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFAC 194
+ KLFN+W+ +DV TD+SL DYI + K+A +PH+AGRY KRFRKAQCPIVER
Sbjct: 18 EVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77
Query: 195 SLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAV 374
SLMMHGR HA E+IHL++ NPIQ++++AI NSG RED+TRIG G V
Sbjct: 78 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVV 137
Query: 375 KRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKD 554
+RQAVD+SPLRRVN+AI L+ TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKD
Sbjct: 138 RRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
Query: 555 ELERVAKSNR 584
E+ERVAK+NR
Sbjct: 198 EIERVAKANR 207
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,003,596
Number of Sequences: 369166
Number of extensions: 1240476
Number of successful extensions: 3265
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3157
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5657676120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)