Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_M08
(552 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46782|RS5_HUMAN 40S ribosomal protein S5 >gi|71153729|s... 257 1e-68
sp|P97461|RS5_MOUSE 40S ribosomal protein S5 255 4e-68
sp|Q24186|RS5A_DROME 40S ribosomal protein S5a 255 6e-68
sp|P24050|RS5_RAT 40S ribosomal protein S5 252 5e-67
sp|P49041|RS5_CAEEL 40S ribosomal protein S5 250 1e-66
sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b 246 2e-65
sp|Q08364|RS5_PODCA 40S ribosomal protein S5 244 8e-65
sp|O65731|RS5_CICAR 40S ribosomal protein S5 231 1e-60
sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1 230 2e-60
sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2 230 2e-60
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
Length = 204
Score = 257 bits (657), Expect = 1e-68
Identities = 130/173 (75%), Positives = 143/173 (82%)
Frame = +2
Query: 2 DLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXX 181
D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVER S+MMHGR
Sbjct: 32 DISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVR 91
Query: 182 XXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAI 361
HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI
Sbjct: 92 IVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAI 151
Query: 362 SLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 520
LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 152 WLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
Length = 204
Score = 255 bits (652), Expect = 4e-68
Identities = 129/173 (74%), Positives = 142/173 (82%)
Frame = +2
Query: 2 DLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXX 181
D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVER S+MMHGR
Sbjct: 32 DISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVR 91
Query: 182 XXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAI 361
HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI
Sbjct: 92 IVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAI 151
Query: 362 SLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 520
LLCTGAREA+FRN K IAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 152 WLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
Length = 228
Score = 255 bits (651), Expect = 6e-68
Identities = 127/173 (73%), Positives = 144/173 (83%)
Frame = +2
Query: 2 DLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXX 181
D+SL DYI+ K+A+ +PHSAGRY KRFRKAQCPIVER CSLMM GR
Sbjct: 56 DISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACR 115
Query: 182 XXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAI 361
H+FE+IHL+TGENP+Q++V+AI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI
Sbjct: 116 IVKHSFEIIHLLTGENPLQILVSAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAI 175
Query: 362 SLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 520
LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 176 WLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228
>sp|P24050|RS5_RAT 40S ribosomal protein S5
Length = 204
Score = 252 bits (643), Expect = 5e-67
Identities = 128/173 (73%), Positives = 140/173 (80%)
Frame = +2
Query: 2 DLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXX 181
D+SL DYI KYAK +PHSAGRY FRKAQCPIVER S+MMHGR
Sbjct: 32 DISLQDYIAVKEKYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVR 91
Query: 182 XXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAI 361
HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI
Sbjct: 92 IVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAI 151
Query: 362 SLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 520
LLCTGAREA+FRN KTIAECL+DELINA KGSSNSYAIKKKDELERVAKSNR
Sbjct: 152 WLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELERVAKSNR 204
>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
Length = 210
Score = 250 bits (639), Expect = 1e-66
Identities = 126/173 (72%), Positives = 143/173 (82%)
Frame = +2
Query: 2 DLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXX 181
D+SL DYI K AK +PHSAGR+Q +RFRKA CPIVER A SLMMHGR
Sbjct: 38 DISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVR 97
Query: 182 XXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAI 361
HAFE+I+L+TGENP+Q++VNA+ NSG REDSTRIGR G V+RQAVDV+PLRRVN+AI
Sbjct: 98 IVKHAFEIIYLLTGENPVQVLVNAVINSGpreDSTRIGRAGTVRRQAVDVAPLRRVNQAI 157
Query: 362 SLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 520
LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 158 WLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
Length = 230
Score = 246 bits (629), Expect = 2e-65
Identities = 124/173 (71%), Positives = 139/173 (80%)
Frame = +2
Query: 2 DLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXX 181
D+SL DYI K+A+ +PHSAGRY KRFRKAQCPIVER LMM GR
Sbjct: 58 DISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTSGLMMKGRSNGKKLLACR 117
Query: 182 XXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAI 361
HAFE+IHL+T ENP+Q+ VNAI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI
Sbjct: 118 IVKHAFEIIHLLTSENPLQVTVNAIVNSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAI 177
Query: 362 SLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 520
L+CTGAREA+FRN KT+AECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 178 WLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230
>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
Length = 210
Score = 244 bits (624), Expect = 8e-65
Identities = 123/173 (71%), Positives = 140/173 (80%)
Frame = +2
Query: 2 DLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXX 181
D+SLTDYI +A +PH+A RY KRFRKAQCPIVER SLMMHGR
Sbjct: 38 DISLTDYIAVKDNHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVR 97
Query: 182 XXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAI 361
H+FE++HL+TGENP+QL+ AISNSG REDSTRIGR G V+RQAVDV+PLRRVN+AI
Sbjct: 98 IVRHSFEIMHLLTGENPLQLVCEAISNSGpreDSTRIGRAGTVRRQAVDVAPLRRVNQAI 157
Query: 362 SLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 520
LLCTGAREASFRN K+IAECL+DELINA++GSSNSYAIKKKDELERVAKSNR
Sbjct: 158 WLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDELERVAKSNR 210
>sp|O65731|RS5_CICAR 40S ribosomal protein S5
Length = 197
Score = 231 bits (588), Expect = 1e-60
Identities = 117/174 (67%), Positives = 138/174 (79%), Gaps = 1/174 (0%)
Frame = +2
Query: 2 DLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXX 178
D+SL DYI K+A +PH+AGRY KRFRKAQCPIVER SLMMHGR
Sbjct: 24 DVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAV 83
Query: 179 XXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKA 358
HA E+IHL+T +NPIQ++V+A+ NSG RED+TRIG G V+RQAVD+SPLRRVN+A
Sbjct: 84 RIIKHAMEIIHLLTDQNPIQVIVDAVVNSGpreDATRIGSAGVVRRQAVDISPLRRVNQA 143
Query: 359 ISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 520
I LL TGAREA+FRN K+IAECL+DELINA+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 144 IYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197
>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
Length = 207
Score = 230 bits (587), Expect = 2e-60
Identities = 117/174 (67%), Positives = 137/174 (78%), Gaps = 1/174 (0%)
Frame = +2
Query: 2 DLSLTDYINYS-GKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXX 178
D+SL DYI K+A +PH+AGRY KRFRKAQCPIVER SLMMHGR
Sbjct: 34 DISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAV 93
Query: 179 XXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKA 358
HA E+IHL++ NPIQ++++AI NSG RED+TRIG G V+RQAVD+SPLRRVN+A
Sbjct: 94 RIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVVRRQAVDISPLRRVNQA 153
Query: 359 ISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 520
I LL TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 154 IFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
>sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2
Length = 207
Score = 230 bits (586), Expect = 2e-60
Identities = 116/174 (66%), Positives = 138/174 (79%), Gaps = 1/174 (0%)
Frame = +2
Query: 2 DLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXX 178
D+SL DYI + K+A +PH+AGRY KRFRKAQCPIVER SLMMHGR
Sbjct: 34 DISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAV 93
Query: 179 XXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKA 358
HA E+IHL++ NPIQ++++AI NSG RED+TRIG G V+RQAVD+SPLRRVN+A
Sbjct: 94 RIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVVRRQAVDISPLRRVNQA 153
Query: 359 ISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 520
I L+ TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 154 IFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,600,633
Number of Sequences: 369166
Number of extensions: 1028471
Number of successful extensions: 2864
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2783
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3882260660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)