Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_G20
(467 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46782|RS5_HUMAN 40S ribosomal protein S5 >gi|71153729|s... 221 6e-58
sp|Q24186|RS5A_DROME 40S ribosomal protein S5a 220 1e-57
sp|P97461|RS5_MOUSE 40S ribosomal protein S5 219 2e-57
sp|P24050|RS5_RAT 40S ribosomal protein S5 218 4e-57
sp|P49041|RS5_CAEEL 40S ribosomal protein S5 218 7e-57
sp|Q08364|RS5_PODCA 40S ribosomal protein S5 216 3e-56
sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b 213 2e-55
sp|O65731|RS5_CICAR 40S ribosomal protein S5 203 2e-52
sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1 201 7e-52
sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2 200 1e-51
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
Length = 204
Score = 221 bits (563), Expect = 6e-58
Identities = 112/145 (77%), Positives = 123/145 (84%)
Frame = +1
Query: 1 RFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNS 180
RFRKAQCPIVER S+MMHGR HAFE+IHL+TGENP+Q++VNAI NS
Sbjct: 60 RFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINS 119
Query: 181 GAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELIN 360
G REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELIN
Sbjct: 120 GpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELIN 179
Query: 361 ASKGSSNSYAIKKKDELERVAKSNR 435
A+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 180 AAKGSSNSYAIKKKDELERVAKSNR 204
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
Length = 228
Score = 220 bits (561), Expect = 1e-57
Identities = 111/145 (76%), Positives = 123/145 (84%)
Frame = +1
Query: 1 RFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNS 180
RFRKAQCPIVER CSLMM GR H+FE+IHL+TGENP+Q++V+AI NS
Sbjct: 84 RFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINS 143
Query: 181 GAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELIN 360
G REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELIN
Sbjct: 144 GpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELIN 203
Query: 361 ASKGSSNSYAIKKKDELERVAKSNR 435
A+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 204 AAKGSSNSYAIKKKDELERVAKSNR 228
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
Length = 204
Score = 219 bits (558), Expect = 2e-57
Identities = 111/145 (76%), Positives = 122/145 (84%)
Frame = +1
Query: 1 RFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNS 180
RFRKAQCPIVER S+MMHGR HAFE+IHL+TGENP+Q++VNAI NS
Sbjct: 60 RFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINS 119
Query: 181 GAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELIN 360
G REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN K IAECL+DELIN
Sbjct: 120 GpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELIN 179
Query: 361 ASKGSSNSYAIKKKDELERVAKSNR 435
A+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 180 AAKGSSNSYAIKKKDELERVAKSNR 204
>sp|P24050|RS5_RAT 40S ribosomal protein S5
Length = 204
Score = 218 bits (556), Expect = 4e-57
Identities = 111/144 (77%), Positives = 121/144 (84%)
Frame = +1
Query: 4 FRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSG 183
FRKAQCPIVER S+MMHGR HAFE+IHL+TGENP+Q++VNAI NSG
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
Query: 184 AREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINA 363
REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA
Sbjct: 121 preDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180
Query: 364 SKGSSNSYAIKKKDELERVAKSNR 435
KGSSNSYAIKKKDELERVAKSNR
Sbjct: 181 RKGSSNSYAIKKKDELERVAKSNR 204
>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
Length = 210
Score = 218 bits (554), Expect = 7e-57
Identities = 110/145 (75%), Positives = 123/145 (84%)
Frame = +1
Query: 1 RFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNS 180
RFRKA CPIVER A SLMMHGR HAFE+I+L+TGENP+Q++VNA+ NS
Sbjct: 66 RFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINS 125
Query: 181 GAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELIN 360
G REDSTRIGR G V+RQAVDV+PLRRVN+AI LLCTGAREA+FRN KTIAECL+DELIN
Sbjct: 126 GpreDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELIN 185
Query: 361 ASKGSSNSYAIKKKDELERVAKSNR 435
A+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 186 AAKGSSNSYAIKKKDELERVAKSNR 210
>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
Length = 210
Score = 216 bits (549), Expect = 3e-56
Identities = 109/145 (75%), Positives = 122/145 (84%)
Frame = +1
Query: 1 RFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNS 180
RFRKAQCPIVER SLMMHGR H+FE++HL+TGENP+QL+ AISNS
Sbjct: 66 RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNS 125
Query: 181 GAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELIN 360
G REDSTRIGR G V+RQAVDV+PLRRVN+AI LLCTGAREASFRN K+IAECL+DELIN
Sbjct: 126 GpreDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELIN 185
Query: 361 ASKGSSNSYAIKKKDELERVAKSNR 435
A++GSSNSYAIKKKDELERVAKSNR
Sbjct: 186 AARGSSNSYAIKKKDELERVAKSNR 210
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
Length = 230
Score = 213 bits (542), Expect = 2e-55
Identities = 108/145 (74%), Positives = 119/145 (82%)
Frame = +1
Query: 1 RFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNS 180
RFRKAQCPIVER LMM GR HAFE+IHL+T ENP+Q+ VNAI NS
Sbjct: 86 RFRKAQCPIVERLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNS 145
Query: 181 GAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELIN 360
G REDSTRIGR G V+RQAVDVSPLRRVN+AI L+CTGAREA+FRN KT+AECL+DELIN
Sbjct: 146 GpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELIN 205
Query: 361 ASKGSSNSYAIKKKDELERVAKSNR 435
A+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 206 AAKGSSNSYAIKKKDELERVAKSNR 230
>sp|O65731|RS5_CICAR 40S ribosomal protein S5
Length = 197
Score = 203 bits (516), Expect = 2e-52
Identities = 102/145 (70%), Positives = 119/145 (82%)
Frame = +1
Query: 1 RFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNS 180
RFRKAQCPIVER SLMMHGR HA E+IHL+T +NPIQ++V+A+ NS
Sbjct: 53 RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNS 112
Query: 181 GAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELIN 360
G RED+TRIG G V+RQAVD+SPLRRVN+AI LL TGAREA+FRN K+IAECL+DELIN
Sbjct: 113 GpreDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELIN 172
Query: 361 ASKGSSNSYAIKKKDELERVAKSNR 435
A+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 173 AAKGSSNSYAIKKKDEIERVAKANR 197
>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
Length = 207
Score = 201 bits (511), Expect = 7e-52
Identities = 102/145 (70%), Positives = 118/145 (81%)
Frame = +1
Query: 1 RFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNS 180
RFRKAQCPIVER SLMMHGR HA E+IHL++ NPIQ++++AI NS
Sbjct: 63 RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNS 122
Query: 181 GAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELIN 360
G RED+TRIG G V+RQAVD+SPLRRVN+AI LL TGAREA+FRN KTIAECL+DELIN
Sbjct: 123 GpreDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELIN 182
Query: 361 ASKGSSNSYAIKKKDELERVAKSNR 435
A+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 183 AAKGSSNSYAIKKKDEIERVAKANR 207
>sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2
Length = 207
Score = 200 bits (509), Expect = 1e-51
Identities = 101/145 (69%), Positives = 118/145 (81%)
Frame = +1
Query: 1 RFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNS 180
RFRKAQCPIVER SLMMHGR HA E+IHL++ NPIQ++++AI NS
Sbjct: 63 RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNS 122
Query: 181 GAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELIN 360
G RED+TRIG G V+RQAVD+SPLRRVN+AI L+ TGAREA+FRN KTIAECL+DELIN
Sbjct: 123 GpreDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELIN 182
Query: 361 ASKGSSNSYAIKKKDELERVAKSNR 435
A+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 183 AAKGSSNSYAIKKKDEIERVAKANR 207
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,163,121
Number of Sequences: 369166
Number of extensions: 837578
Number of successful extensions: 2377
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2308
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)