Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_K10
(477 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46782|RS5_HUMAN 40S ribosomal protein S5 >gi|71153729|s... 223 2e-58
sp|Q24186|RS5A_DROME 40S ribosomal protein S5a 222 3e-58
sp|P97461|RS5_MOUSE 40S ribosomal protein S5 221 7e-58
sp|P49041|RS5_CAEEL 40S ribosomal protein S5 220 1e-57
sp|P24050|RS5_RAT 40S ribosomal protein S5 218 4e-57
sp|Q08364|RS5_PODCA 40S ribosomal protein S5 218 7e-57
sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b 215 5e-56
sp|O65731|RS5_CICAR 40S ribosomal protein S5 205 5e-53
sp|O24111|RS5_NICPL 40S ribosomal protein S5 203 1e-52
sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1 203 2e-52
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
Length = 204
Score = 223 bits (568), Expect = 2e-58
Identities = 113/146 (77%), Positives = 124/146 (84%)
Frame = +2
Query: 8 KRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISN 187
KRFRKAQCPIVER S+MMHGR HAFE+IHL+TGENP+Q++VNAI N
Sbjct: 59 KRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIIN 118
Query: 188 SGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELI 367
SG REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELI
Sbjct: 119 SGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELI 178
Query: 368 NASKGSSNSYAIKKKDELERVAKSNR 445
NA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 179 NAAKGSSNSYAIKKKDELERVAKSNR 204
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
Length = 228
Score = 222 bits (566), Expect = 3e-58
Identities = 112/146 (76%), Positives = 124/146 (84%)
Frame = +2
Query: 8 KRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISN 187
KRFRKAQCPIVER CSLMM GR H+FE+IHL+TGENP+Q++V+AI N
Sbjct: 83 KRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIIN 142
Query: 188 SGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELI 367
SG REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELI
Sbjct: 143 SGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELI 202
Query: 368 NASKGSSNSYAIKKKDELERVAKSNR 445
NA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 203 NAAKGSSNSYAIKKKDELERVAKSNR 228
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
Length = 204
Score = 221 bits (563), Expect = 7e-58
Identities = 112/146 (76%), Positives = 123/146 (84%)
Frame = +2
Query: 8 KRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISN 187
KRFRKAQCPIVER S+MMHGR HAFE+IHL+TGENP+Q++VNAI N
Sbjct: 59 KRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIIN 118
Query: 188 SGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELI 367
SG REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN K IAECL+DELI
Sbjct: 119 SGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELI 178
Query: 368 NASKGSSNSYAIKKKDELERVAKSNR 445
NA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 179 NAAKGSSNSYAIKKKDELERVAKSNR 204
>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
Length = 210
Score = 220 bits (561), Expect = 1e-57
Identities = 111/148 (75%), Positives = 125/148 (84%)
Frame = +2
Query: 2 QTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAI 181
Q +RFRKA CPIVER A SLMMHGR HAFE+I+L+TGENP+Q++VNA+
Sbjct: 63 QVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAV 122
Query: 182 SNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDE 361
NSG REDSTRIGR G V+RQAVDV+PLRRVN+AI LLCTGAREA+FRN KTIAECL+DE
Sbjct: 123 INSGpreDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADE 182
Query: 362 LINASKGSSNSYAIKKKDELERVAKSNR 445
LINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 183 LINAAKGSSNSYAIKKKDELERVAKSNR 210
>sp|P24050|RS5_RAT 40S ribosomal protein S5
Length = 204
Score = 218 bits (556), Expect = 4e-57
Identities = 111/144 (77%), Positives = 121/144 (84%)
Frame = +2
Query: 14 FRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSG 193
FRKAQCPIVER S+MMHGR HAFE+IHL+TGENP+Q++VNAI NSG
Sbjct: 61 FRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSG 120
Query: 194 AREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINA 373
REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA
Sbjct: 121 preDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINA 180
Query: 374 SKGSSNSYAIKKKDELERVAKSNR 445
KGSSNSYAIKKKDELERVAKSNR
Sbjct: 181 RKGSSNSYAIKKKDELERVAKSNR 204
>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
Length = 210
Score = 218 bits (554), Expect = 7e-57
Identities = 110/146 (75%), Positives = 123/146 (84%)
Frame = +2
Query: 8 KRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISN 187
KRFRKAQCPIVER SLMMHGR H+FE++HL+TGENP+QL+ AISN
Sbjct: 65 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISN 124
Query: 188 SGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELI 367
SG REDSTRIGR G V+RQAVDV+PLRRVN+AI LLCTGAREASFRN K+IAECL+DELI
Sbjct: 125 SGpreDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELI 184
Query: 368 NASKGSSNSYAIKKKDELERVAKSNR 445
NA++GSSNSYAIKKKDELERVAKSNR
Sbjct: 185 NAARGSSNSYAIKKKDELERVAKSNR 210
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
Length = 230
Score = 215 bits (547), Expect = 5e-56
Identities = 109/146 (74%), Positives = 120/146 (82%)
Frame = +2
Query: 8 KRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISN 187
KRFRKAQCPIVER LMM GR HAFE+IHL+T ENP+Q+ VNAI N
Sbjct: 85 KRFRKAQCPIVERLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVN 144
Query: 188 SGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELI 367
SG REDSTRIGR G V+RQAVDVSPLRRVN+AI L+CTGAREA+FRN KT+AECL+DELI
Sbjct: 145 SGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELI 204
Query: 368 NASKGSSNSYAIKKKDELERVAKSNR 445
NA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 205 NAAKGSSNSYAIKKKDELERVAKSNR 230
>sp|O65731|RS5_CICAR 40S ribosomal protein S5
Length = 197
Score = 205 bits (521), Expect = 5e-53
Identities = 103/146 (70%), Positives = 120/146 (82%)
Frame = +2
Query: 8 KRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISN 187
KRFRKAQCPIVER SLMMHGR HA E+IHL+T +NPIQ++V+A+ N
Sbjct: 52 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVN 111
Query: 188 SGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELI 367
SG RED+TRIG G V+RQAVD+SPLRRVN+AI LL TGAREA+FRN K+IAECL+DELI
Sbjct: 112 SGpreDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELI 171
Query: 368 NASKGSSNSYAIKKKDELERVAKSNR 445
NA+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 172 NAAKGSSNSYAIKKKDEIERVAKANR 197
>sp|O24111|RS5_NICPL 40S ribosomal protein S5
Length = 154
Score = 203 bits (517), Expect = 1e-52
Identities = 103/148 (69%), Positives = 120/148 (81%)
Frame = +2
Query: 2 QTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAI 181
Q KRFRKAQCPIVER SLMMHGR HA E+IHL+T NPIQ++V+A+
Sbjct: 7 QAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDLNPIQVIVDAV 66
Query: 182 SNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDE 361
NSG RED+TRIG G V+RQAVD+SPLRRV++AI LL TGARE++FRN KTIAECL+DE
Sbjct: 67 INSGpreDATRIGSAGVVRRQAVDISPLRRVSQAIYLLTTGARESAFRNIKTIAECLADE 126
Query: 362 LINASKGSSNSYAIKKKDELERVAKSNR 445
LINA+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 127 LINAAKGSSNSYAIKKKDEIERVAKANR 154
>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
Length = 207
Score = 203 bits (516), Expect = 2e-52
Identities = 103/146 (70%), Positives = 119/146 (81%)
Frame = +2
Query: 8 KRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISN 187
KRFRKAQCPIVER SLMMHGR HA E+IHL++ NPIQ++++AI N
Sbjct: 62 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVN 121
Query: 188 SGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELI 367
SG RED+TRIG G V+RQAVD+SPLRRVN+AI LL TGAREA+FRN KTIAECL+DELI
Sbjct: 122 SGpreDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELI 181
Query: 368 NASKGSSNSYAIKKKDELERVAKSNR 445
NA+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 182 NAAKGSSNSYAIKKKDEIERVAKANR 207
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,800,934
Number of Sequences: 369166
Number of extensions: 849274
Number of successful extensions: 2415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2342
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2832714465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)