Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_C08
(415 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46782|RS5_HUMAN 40S ribosomal protein S5 >gi|71153729|s... 191 4e-49
sp|P24050|RS5_RAT 40S ribosomal protein S5 191 7e-49
sp|P97461|RS5_MOUSE 40S ribosomal protein S5 189 1e-48
sp|P49041|RS5_CAEEL 40S ribosomal protein S5 188 4e-48
sp|Q24186|RS5A_DROME 40S ribosomal protein S5a 186 1e-47
sp|Q08364|RS5_PODCA 40S ribosomal protein S5 185 3e-47
sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b 184 5e-47
sp|O65731|RS5_CICAR 40S ribosomal protein S5 172 2e-43
sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1 171 7e-43
sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2 170 1e-42
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
Length = 204
Score = 191 bits (486), Expect = 4e-49
Identities = 97/126 (76%), Positives = 107/126 (84%)
Frame = +3
Query: 3 HGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQA 182
HGR HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQA
Sbjct: 79 HGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQA 138
Query: 183 VDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELER 362
VDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELER
Sbjct: 139 VDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELER 198
Query: 363 VAKSNR 380
VAKSNR
Sbjct: 199 VAKSNR 204
>sp|P24050|RS5_RAT 40S ribosomal protein S5
Length = 204
Score = 191 bits (484), Expect = 7e-49
Identities = 97/126 (76%), Positives = 106/126 (84%)
Frame = +3
Query: 3 HGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQA 182
HGR HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQA
Sbjct: 79 HGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQA 138
Query: 183 VDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELER 362
VDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA KGSSNSYAIKKKDELER
Sbjct: 139 VDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELER 198
Query: 363 VAKSNR 380
VAKSNR
Sbjct: 199 VAKSNR 204
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
Length = 204
Score = 189 bits (481), Expect = 1e-48
Identities = 96/126 (76%), Positives = 106/126 (84%)
Frame = +3
Query: 3 HGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQA 182
HGR HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQA
Sbjct: 79 HGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQA 138
Query: 183 VDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELER 362
VDVSPLRRVN+AI LLCTGAREA+FRN K IAECL+DELINA+KGSSNSYAIKKKDELER
Sbjct: 139 VDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDELER 198
Query: 363 VAKSNR 380
VAKSNR
Sbjct: 199 VAKSNR 204
>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
Length = 210
Score = 188 bits (477), Expect = 4e-48
Identities = 94/126 (74%), Positives = 107/126 (84%)
Frame = +3
Query: 3 HGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQA 182
HGR HAFE+I+L+TGENP+Q++VNA+ NSG REDSTRIGR G V+RQA
Sbjct: 85 HGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGpreDSTRIGRAGTVRRQA 144
Query: 183 VDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELER 362
VDV+PLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELER
Sbjct: 145 VDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELER 204
Query: 363 VAKSNR 380
VAKSNR
Sbjct: 205 VAKSNR 210
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
Length = 228
Score = 186 bits (473), Expect = 1e-47
Identities = 92/110 (83%), Positives = 104/110 (94%)
Frame = +3
Query: 51 HAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLL 230
H+FE+IHL+TGENP+Q++V+AI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI LL
Sbjct: 119 HSFEIIHLLTGENPLQILVSAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLL 178
Query: 231 CTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 380
CTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 179 CTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228
>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
Length = 210
Score = 185 bits (470), Expect = 3e-47
Identities = 93/126 (73%), Positives = 106/126 (84%)
Frame = +3
Query: 3 HGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQA 182
HGR H+FE++HL+TGENP+QL+ AISNSG REDSTRIGR G V+RQA
Sbjct: 85 HGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGpreDSTRIGRAGTVRRQA 144
Query: 183 VDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELER 362
VDV+PLRRVN+AI LLCTGAREASFRN K+IAECL+DELINA++GSSNSYAIKKKDELER
Sbjct: 145 VDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDELER 204
Query: 363 VAKSNR 380
VAKSNR
Sbjct: 205 VAKSNR 210
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
Length = 230
Score = 184 bits (468), Expect = 5e-47
Identities = 91/110 (82%), Positives = 102/110 (92%)
Frame = +3
Query: 51 HAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLL 230
HAFE+IHL+T ENP+Q+ VNAI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI L+
Sbjct: 121 HAFEIIHLLTSENPLQVTVNAIVNSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLI 180
Query: 231 CTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 380
CTGAREA+FRN KT+AECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 181 CTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230
>sp|O65731|RS5_CICAR 40S ribosomal protein S5
Length = 197
Score = 172 bits (437), Expect = 2e-43
Identities = 86/126 (68%), Positives = 103/126 (81%)
Frame = +3
Query: 3 HGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQA 182
HGR HA E+IHL+T +NPIQ++V+A+ NSG RED+TRIG G V+RQA
Sbjct: 72 HGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGpreDATRIGSAGVVRRQA 131
Query: 183 VDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELER 362
VD+SPLRRVN+AI LL TGAREA+FRN K+IAECL+DELINA+KGSSNSYAIKKKDE+ER
Sbjct: 132 VDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIER 191
Query: 363 VAKSNR 380
VAK+NR
Sbjct: 192 VAKANR 197
>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
Length = 207
Score = 171 bits (432), Expect = 7e-43
Identities = 86/126 (68%), Positives = 102/126 (80%)
Frame = +3
Query: 3 HGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQA 182
HGR HA E+IHL++ NPIQ++++AI NSG RED+TRIG G V+RQA
Sbjct: 82 HGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVVRRQA 141
Query: 183 VDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELER 362
VD+SPLRRVN+AI LL TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDE+ER
Sbjct: 142 VDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIER 201
Query: 363 VAKSNR 380
VAK+NR
Sbjct: 202 VAKANR 207
>sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2
Length = 207
Score = 170 bits (430), Expect = 1e-42
Identities = 85/126 (67%), Positives = 102/126 (80%)
Frame = +3
Query: 3 HGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQA 182
HGR HA E+IHL++ NPIQ++++AI NSG RED+TRIG G V+RQA
Sbjct: 82 HGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVVRRQA 141
Query: 183 VDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELER 362
VD+SPLRRVN+AI L+ TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDE+ER
Sbjct: 142 VDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIER 201
Query: 363 VAKSNR 380
VAK+NR
Sbjct: 202 VAKANR 207
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,999,467
Number of Sequences: 369166
Number of extensions: 730820
Number of successful extensions: 2232
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2163
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)