Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_D05
(596 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46782|RS5_HUMAN 40S ribosomal protein S5 >gi|71153729|s... 277 2e-74
sp|P97461|RS5_MOUSE 40S ribosomal protein S5 275 6e-74
sp|P24050|RS5_RAT 40S ribosomal protein S5 271 7e-73
sp|Q24186|RS5A_DROME 40S ribosomal protein S5a 271 1e-72
sp|P49041|RS5_CAEEL 40S ribosomal protein S5 265 9e-71
sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b 261 9e-70
sp|Q08364|RS5_PODCA 40S ribosomal protein S5 258 8e-69
sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1 250 2e-66
sp|O65731|RS5_CICAR 40S ribosomal protein S5 249 4e-66
sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2 248 6e-66
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
Length = 204
Score = 277 bits (708), Expect = 2e-74
Identities = 139/187 (74%), Positives = 153/187 (81%)
Frame = +1
Query: 4 KLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLM 183
KLF KWST+DV D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVER S+M
Sbjct: 18 KLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMM 77
Query: 184 MHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQ 363
MHGR HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQ
Sbjct: 78 MHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQ 137
Query: 364 AVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELE 543
AVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELE
Sbjct: 138 AVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELE 197
Query: 544 RVAKSNR 564
RVAKSNR
Sbjct: 198 RVAKSNR 204
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
Length = 204
Score = 275 bits (703), Expect = 6e-74
Identities = 138/187 (73%), Positives = 152/187 (81%)
Frame = +1
Query: 4 KLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLM 183
KLF KWST+DV D+SL DYI KYAK +PHSAGRY KRFRKAQCPIVER S+M
Sbjct: 18 KLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMM 77
Query: 184 MHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQ 363
MHGR HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQ
Sbjct: 78 MHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQ 137
Query: 364 AVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELE 543
AVDVSPLRRVN+AI LLCTGAREA+FRN K IAECL+DELINA+KGSSNSYAIKKKDELE
Sbjct: 138 AVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDELE 197
Query: 544 RVAKSNR 564
RVAKSNR
Sbjct: 198 RVAKSNR 204
>sp|P24050|RS5_RAT 40S ribosomal protein S5
Length = 204
Score = 271 bits (694), Expect = 7e-73
Identities = 137/187 (73%), Positives = 150/187 (80%)
Frame = +1
Query: 4 KLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLM 183
KLF KWST+DV D+SL DYI KYAK +PHSAGRY FRKAQCPIVER S+M
Sbjct: 18 KLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMM 77
Query: 184 MHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQ 363
MHGR HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+RQ
Sbjct: 78 MHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQ 137
Query: 364 AVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELE 543
AVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA KGSSNSYAIKKKDELE
Sbjct: 138 AVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELE 197
Query: 544 RVAKSNR 564
RVAKSNR
Sbjct: 198 RVAKSNR 204
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
Length = 228
Score = 271 bits (692), Expect = 1e-72
Identities = 134/187 (71%), Positives = 153/187 (81%)
Frame = +1
Query: 4 KLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLM 183
KLF +WS +DV D+SL DYI+ K+A+ +PHSAGRY KRFRKAQCPIVER CSLM
Sbjct: 42 KLFGRWSCDDVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLM 101
Query: 184 MHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQ 363
M GR H+FE+IHL+TGENP+Q++V+AI NSG REDSTRIGR G V+RQ
Sbjct: 102 MKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGpreDSTRIGRAGTVRRQ 161
Query: 364 AVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELE 543
AVDVSPLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELE
Sbjct: 162 AVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELE 221
Query: 544 RVAKSNR 564
RVAKSNR
Sbjct: 222 RVAKSNR 228
>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
Length = 210
Score = 265 bits (676), Expect = 9e-71
Identities = 132/186 (70%), Positives = 152/186 (81%)
Frame = +1
Query: 7 LFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLMM 186
LF KWS + V+ +D+SL DYI K AK +PHSAGR+Q +RFRKA CPIVER A SLMM
Sbjct: 25 LFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMM 84
Query: 187 HGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQA 366
HGR HAFE+I+L+TGENP+Q++VNA+ NSG REDSTRIGR G V+RQA
Sbjct: 85 HGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGpreDSTRIGRAGTVRRQA 144
Query: 367 VDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELER 546
VDV+PLRRVN+AI LLCTGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDELER
Sbjct: 145 VDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELER 204
Query: 547 VAKSNR 564
VAKSNR
Sbjct: 205 VAKSNR 210
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
Length = 230
Score = 261 bits (667), Expect = 9e-70
Identities = 129/187 (68%), Positives = 149/187 (79%)
Frame = +1
Query: 4 KLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLM 183
KLF +W+ +D+ +D+SL DYI K+A+ +PHSAGRY KRFRKAQCPIVER LM
Sbjct: 44 KLFGRWACDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTSGLM 103
Query: 184 MHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQ 363
M GR HAFE+IHL+T ENP+Q+ VNAI NSG REDSTRIGR G V+RQ
Sbjct: 104 MKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGpreDSTRIGRAGTVRRQ 163
Query: 364 AVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELE 543
AVDVSPLRRVN+AI L+CTGAREA+FRN KT+AECL+DELINA+KGSSNSYAIKKKDELE
Sbjct: 164 AVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSSNSYAIKKKDELE 223
Query: 544 RVAKSNR 564
RVAKSNR
Sbjct: 224 RVAKSNR 230
>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
Length = 210
Score = 258 bits (659), Expect = 8e-69
Identities = 129/187 (68%), Positives = 149/187 (79%)
Frame = +1
Query: 4 KLFNKWSTEDVHTTDLSLTDYINYSGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSLM 183
KLF KW E ++ +D+SLTDYI +A +PH+A RY KRFRKAQCPIVER SLM
Sbjct: 24 KLFGKWPLEGLNISDISLTDYIAVKDNHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLM 83
Query: 184 MHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQ 363
MHGR H+FE++HL+TGENP+QL+ AISNSG REDSTRIGR G V+RQ
Sbjct: 84 MHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGpreDSTRIGRAGTVRRQ 143
Query: 364 AVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDELE 543
AVDV+PLRRVN+AI LLCTGAREASFRN K+IAECL+DELINA++GSSNSYAIKKKDELE
Sbjct: 144 AVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDELE 203
Query: 544 RVAKSNR 564
RVAKSNR
Sbjct: 204 RVAKSNR 210
>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
Length = 207
Score = 250 bits (639), Expect = 2e-66
Identities = 126/188 (67%), Positives = 148/188 (78%), Gaps = 1/188 (0%)
Frame = +1
Query: 4 KLFNKWSTEDVHTTDLSLTDYINYS-GKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSL 180
KLFN+WS +DV TD+SL DYI K+A +PH+AGRY KRFRKAQCPIVER SL
Sbjct: 20 KLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSL 79
Query: 181 MMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKR 360
MMHGR HA E+IHL++ NPIQ++++AI NSG RED+TRIG G V+R
Sbjct: 80 MMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVVRR 139
Query: 361 QAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDEL 540
QAVD+SPLRRVN+AI LL TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDE+
Sbjct: 140 QAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEI 199
Query: 541 ERVAKSNR 564
ERVAK+NR
Sbjct: 200 ERVAKANR 207
>sp|O65731|RS5_CICAR 40S ribosomal protein S5
Length = 197
Score = 249 bits (636), Expect = 4e-66
Identities = 125/188 (66%), Positives = 149/188 (79%), Gaps = 1/188 (0%)
Frame = +1
Query: 4 KLFNKWSTEDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSL 180
KLFN+WS +DV +D+SL DYI K+A +PH+AGRY KRFRKAQCPIVER SL
Sbjct: 10 KLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSL 69
Query: 181 MMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKR 360
MMHGR HA E+IHL+T +NPIQ++V+A+ NSG RED+TRIG G V+R
Sbjct: 70 MMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGpreDATRIGSAGVVRR 129
Query: 361 QAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDEL 540
QAVD+SPLRRVN+AI LL TGAREA+FRN K+IAECL+DELINA+KGSSNSYAIKKKDE+
Sbjct: 130 QAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEI 189
Query: 541 ERVAKSNR 564
ERVAK+NR
Sbjct: 190 ERVAKANR 197
>sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2
Length = 207
Score = 248 bits (634), Expect = 6e-66
Identities = 124/188 (65%), Positives = 149/188 (79%), Gaps = 1/188 (0%)
Frame = +1
Query: 4 KLFNKWSTEDVHTTDLSLTDYINY-SGKYAKIIPHSAGRYQTKRFRKAQCPIVERFACSL 180
KLFN+W+ +DV TD+SL DYI + K+A +PH+AGRY KRFRKAQCPIVER SL
Sbjct: 20 KLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSL 79
Query: 181 MMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKR 360
MMHGR HA E+IHL++ NPIQ++++AI NSG RED+TRIG G V+R
Sbjct: 80 MMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVVRR 139
Query: 361 QAVDVSPLRRVNKAISLLCTGAREASFRNSKTIAECLSDELINASKGSSNSYAIKKKDEL 540
QAVD+SPLRRVN+AI L+ TGAREA+FRN KTIAECL+DELINA+KGSSNSYAIKKKDE+
Sbjct: 140 QAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEI 199
Query: 541 ERVAKSNR 564
ERVAK+NR
Sbjct: 200 ERVAKANR 207
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,150,299
Number of Sequences: 369166
Number of extensions: 1144796
Number of successful extensions: 3135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3028
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)