Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_M13
(528 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46782|RS5_HUMAN 40S ribosomal protein S5 >gi|71153729|s... 240 1e-63
sp|P97461|RS5_MOUSE 40S ribosomal protein S5 238 5e-63
sp|Q24186|RS5A_DROME 40S ribosomal protein S5a 238 5e-63
sp|P49041|RS5_CAEEL 40S ribosomal protein S5 235 4e-62
sp|P24050|RS5_RAT 40S ribosomal protein S5 235 6e-62
sp|Q08364|RS5_PODCA 40S ribosomal protein S5 232 5e-61
sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b 231 8e-61
sp|O65731|RS5_CICAR 40S ribosomal protein S5 223 2e-58
sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1 222 5e-58
sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2 221 8e-58
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
Length = 204
Score = 240 bits (613), Expect = 1e-63
Identities = 120/161 (74%), Positives = 135/161 (83%)
Frame = +3
Query: 3 RHEEIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLM 182
++ + +PHSAGRY KRFRKAQCPIVER S+MMHGR HAFE+IHL+
Sbjct: 44 KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLL 103
Query: 183 TGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASF 362
TGENP+Q++VNAI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCTGAREA+F
Sbjct: 104 TGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAF 163
Query: 363 RNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 485
RN KTIAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 164 RNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
Length = 204
Score = 238 bits (608), Expect = 5e-63
Identities = 119/161 (73%), Positives = 134/161 (83%)
Frame = +3
Query: 3 RHEEIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLM 182
++ + +PHSAGRY KRFRKAQCPIVER S+MMHGR HAFE+IHL+
Sbjct: 44 KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLL 103
Query: 183 TGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASF 362
TGENP+Q++VNAI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCTGAREA+F
Sbjct: 104 TGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAF 163
Query: 363 RNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 485
RN K IAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 164 RNIKNIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
Length = 228
Score = 238 bits (608), Expect = 5e-63
Identities = 119/156 (76%), Positives = 132/156 (84%)
Frame = +3
Query: 18 IPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENP 197
+PHSAGRY KRFRKAQCPIVER CSLMM GR H+FE+IHL+TGENP
Sbjct: 73 LPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENP 132
Query: 198 IQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKT 377
+Q++V+AI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCTGAREA+FRN KT
Sbjct: 133 LQILVSAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKT 192
Query: 378 IAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 485
IAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 193 IAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228
>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
Length = 210
Score = 235 bits (600), Expect = 4e-62
Identities = 117/156 (75%), Positives = 133/156 (85%)
Frame = +3
Query: 18 IPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENP 197
+PHSAGR+Q +RFRKA CPIVER A SLMMHGR HAFE+I+L+TGENP
Sbjct: 55 LPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENP 114
Query: 198 IQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKT 377
+Q++VNA+ NSG REDSTRIGR G V+RQAVDV+PLRRVN+AI LLCTGAREA+FRN KT
Sbjct: 115 VQVLVNAVINSGpreDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKT 174
Query: 378 IAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 485
IAECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 175 IAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210
>sp|P24050|RS5_RAT 40S ribosomal protein S5
Length = 204
Score = 235 bits (599), Expect = 6e-62
Identities = 118/161 (73%), Positives = 132/161 (81%)
Frame = +3
Query: 3 RHEEIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLM 182
++ + +PHSAGRY FRKAQCPIVER S+MMHGR HAFE+IHL+
Sbjct: 44 KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLL 103
Query: 183 TGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASF 362
TGENP+Q++VNAI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI LLCTGAREA+F
Sbjct: 104 TGENPLQVLVNAIINSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAF 163
Query: 363 RNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 485
RN KTIAECL+DELINA KGSSNSYAIKKKDELERVAKSNR
Sbjct: 164 RNIKTIAECLADELINARKGSSNSYAIKKKDELERVAKSNR 204
>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
Length = 210
Score = 232 bits (591), Expect = 5e-61
Identities = 116/160 (72%), Positives = 131/160 (81%)
Frame = +3
Query: 6 HEEIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMT 185
H +PH+A RY KRFRKAQCPIVER SLMMHGR H+FE++HL+T
Sbjct: 51 HAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLT 110
Query: 186 GENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFR 365
GENP+QL+ AISNSG REDSTRIGR G V+RQAVDV+PLRRVN+AI LLCTGAREASFR
Sbjct: 111 GENPLQLVCEAISNSGpreDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFR 170
Query: 366 NSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 485
N K+IAECL+DELINA++GSSNSYAIKKKDELERVAKSNR
Sbjct: 171 NIKSIAECLADELINAARGSSNSYAIKKKDELERVAKSNR 210
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
Length = 230
Score = 231 bits (589), Expect = 8e-61
Identities = 116/156 (74%), Positives = 128/156 (82%)
Frame = +3
Query: 18 IPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENP 197
+PHSAGRY KRFRKAQCPIVER LMM GR HAFE+IHL+T ENP
Sbjct: 75 LPHSAGRYAAKRFRKAQCPIVERLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENP 134
Query: 198 IQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASFRNSKT 377
+Q+ VNAI NSG REDSTRIGR G V+RQAVDVSPLRRVN+AI L+CTGAREA+FRN KT
Sbjct: 135 LQVTVNAIVNSGpreDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKT 194
Query: 378 IAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 485
+AECL+DELINA+KGSSNSYAIKKKDELERVAKSNR
Sbjct: 195 VAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 230
>sp|O65731|RS5_CICAR 40S ribosomal protein S5
Length = 197
Score = 223 bits (569), Expect = 2e-58
Identities = 110/161 (68%), Positives = 130/161 (80%)
Frame = +3
Query: 3 RHEEIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLM 182
+H +PH+AGRY KRFRKAQCPIVER SLMMHGR HA E+IHL+
Sbjct: 37 KHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLL 96
Query: 183 TGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASF 362
T +NPIQ++V+A+ NSG RED+TRIG G V+RQAVD+SPLRRVN+AI LL TGAREA+F
Sbjct: 97 TDQNPIQVIVDAVVNSGpreDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAF 156
Query: 363 RNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 485
RN K+IAECL+DELINA+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 157 RNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197
>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
Length = 207
Score = 222 bits (565), Expect = 5e-58
Identities = 110/161 (68%), Positives = 129/161 (80%)
Frame = +3
Query: 3 RHEEIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLM 182
+H +PH+AGRY KRFRKAQCPIVER SLMMHGR HA E+IHL+
Sbjct: 47 KHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL 106
Query: 183 TGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASF 362
+ NPIQ++++AI NSG RED+TRIG G V+RQAVD+SPLRRVN+AI LL TGAREA+F
Sbjct: 107 SDLNPIQVIIDAIVNSGpreDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAF 166
Query: 363 RNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 485
RN KTIAECL+DELINA+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 167 RNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
>sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2
Length = 207
Score = 221 bits (563), Expect = 8e-58
Identities = 109/161 (67%), Positives = 129/161 (80%)
Frame = +3
Query: 3 RHEEIIPHSAGRYQTKRFRKAQCPIVERFACSLMMHGRXXXXXXXXXXXXXHAFELIHLM 182
+H +PH+AGRY KRFRKAQCPIVER SLMMHGR HA E+IHL+
Sbjct: 47 KHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL 106
Query: 183 TGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQAVDVSPLRRVNKAISLLCTGAREASF 362
+ NPIQ++++AI NSG RED+TRIG G V+RQAVD+SPLRRVN+AI L+ TGAREA+F
Sbjct: 107 SDLNPIQVIIDAIVNSGpreDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAF 166
Query: 363 RNSKTIAECLSDELINASKGSSNSYAIKKKDELERVAKSNR 485
RN KTIAECL+DELINA+KGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 167 RNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,020,546
Number of Sequences: 369166
Number of extensions: 980541
Number of successful extensions: 2684
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2603
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)