Planaria EST Database

DrC_00625

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00625
         (873 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O17915|RAN_CAEEL  GTP-binding nuclear protein ran-1            366   e-101
sp|P38542|RAN_BRUMA  GTP-binding nuclear protein Ran (GTPase...   362   e-99 
sp|P79735|RAN_BRARE  GTP-binding nuclear protein Ran (GTPase...   362   e-99 
sp|P62826|RAN_HUMAN  GTP-binding nuclear protein Ran (GTPase...   361   1e-99
sp|P42558|RAN_CHICK  GTP-binding nuclear protein Ran (GTPase...   361   1e-99
sp|P52301|RAN_XENLA  GTP-binding nuclear protein Ran (GTPase...   361   1e-99
sp|Q9VZ23|RAN_DROME  GTP-binding nuclear protein Ran              361   2e-99
sp|Q9YGC0|RAN_SALSA  GTP-binding nuclear protein Ran (GTPase...   360   2e-99
sp|Q6GL85|RAN_XENTR  GTP-binding nuclear protein Ran (GTPase...   360   4e-99
sp|Q7ZZX9|RAN_CARAU  GTP-binding nuclear protein Ran (GTPase...   359   6e-99

>sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1
          Length = 215

 Score =  366 bits (940), Expect = e-101
 Identities = 173/212 (81%), Positives = 186/212 (87%)
 Frame = +1

Query: 10  GDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVW 189
           GD +  FKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG+IRFNVW
Sbjct: 4   GDGIPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVW 63

Query: 190 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKV 369
           DTAGQEKFGGLRDGYYIQGQCAIIMFDVT+R+TYKNVPNWHRDL RVCENIPIVL GNKV
Sbjct: 64  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKV 123

Query: 370 DIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAP 549
           D+KDRKVKAKTITFHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF  MPALAP
Sbjct: 124 DVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAP 183

Query: 550 PEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 645
           PEV MDP  +              LPD+D+DL
Sbjct: 184 PEVQMDPAMIAEYEKDLDNAAKADLPDDDDDL 215

>sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
          Length = 215

 Score =  362 bits (928), Expect = e-99
 Identities = 172/213 (80%), Positives = 185/213 (86%)
 Frame = +1

Query: 7   SGDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNV 186
           +GD +  FKLVLVGDGGTGKTTFVKRH+TG+FEKKYVATLGVEVHPL F+T RG+IRFNV
Sbjct: 3   TGDDIPTFKLVLVGDGGTGKTTFVKRHLTGDFEKKYVATLGVEVHPLIFHTNRGQIRFNV 62

Query: 187 WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNK 366
           WDTAGQEKFGGLRDGYYIQGQCA  MFDVT+R+TYKNVPNWHRDLVRVCENIPIVL GNK
Sbjct: 63  WDTAGQEKFGGLRDGYYIQGQCAFNMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNK 122

Query: 367 VDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALA 546
           VD+KDRKVKAKTITFHRKKNLQYYD+SAKSNYNFEKP LW+ARKL+GDPNLEF  MPALA
Sbjct: 123 VDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALA 182

Query: 547 PPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 645
           PPEV MDP  V              LPD+DEDL
Sbjct: 183 PPEVQMDPTMVAQYEQEIAAAANAELPDDDEDL 215

>sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase Ran)
          Length = 215

 Score =  362 bits (928), Expect = e-99
 Identities = 171/207 (82%), Positives = 182/207 (87%)
 Frame = +1

Query: 25  QFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQ 204
           QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQ
Sbjct: 9   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQ 68

Query: 205 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDR 384
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDR
Sbjct: 69  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128

Query: 385 KVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPM 564
           KVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EMPALAPPE+ M
Sbjct: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAM 188

Query: 565 DPNWVXXXXXXXXXXXXXPLPDEDEDL 645
           DP                 LPDED+DL
Sbjct: 189 DPTLAAQYEHDLKVASETALPDEDDDL 215

>sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
           (Androgen receptor-associated protein 24)
 sp|P62828|RAN_RAT GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
 sp|P62827|RAN_MOUSE GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
 sp|P62825|RAN_CANFA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
          Length = 216

 Score =  361 bits (927), Expect = 1e-99
 Identities = 173/212 (81%), Positives = 183/212 (86%)
 Frame = +1

Query: 10  GDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVW 189
           G+   QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVW
Sbjct: 5   GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 64

Query: 190 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKV 369
           DTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKV
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124

Query: 370 DIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAP 549
           DIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF  MPALAP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184

Query: 550 PEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 645
           PEV MDP                 LPDED+DL
Sbjct: 185 PEVVMDPALAAQYEHDLEVAQTTALPDEDDDL 216

>sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
          Length = 216

 Score =  361 bits (927), Expect = 1e-99
 Identities = 173/212 (81%), Positives = 183/212 (86%)
 Frame = +1

Query: 10  GDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVW 189
           G+   QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVW
Sbjct: 5   GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 64

Query: 190 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKV 369
           DTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKV
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124

Query: 370 DIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAP 549
           DIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF  MPALAP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184

Query: 550 PEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 645
           PEV MDP                 LPDED+DL
Sbjct: 185 PEVVMDPALAAQYEQDLQIAQTTALPDEDDDL 216

>sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
          Length = 216

 Score =  361 bits (927), Expect = 1e-99
 Identities = 173/212 (81%), Positives = 183/212 (86%)
 Frame = +1

Query: 10  GDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVW 189
           G+   QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVW
Sbjct: 5   GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 64

Query: 190 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKV 369
           DTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKV
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124

Query: 370 DIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAP 549
           DIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF  MPALAP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184

Query: 550 PEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 645
           PEV MDP                 LPDED+DL
Sbjct: 185 PEVVMDPALAAQYEQDLQNAQATALPDEDDDL 216

>sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran
          Length = 216

 Score =  361 bits (926), Expect = 2e-99
 Identities = 172/212 (81%), Positives = 182/212 (85%)
 Frame = +1

Query: 10  GDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVW 189
           G  +  FK VLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG IRFNVW
Sbjct: 5   GQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVW 64

Query: 190 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKV 369
           DTAGQEKFGGLRDGYYIQGQCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKV
Sbjct: 65  DTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124

Query: 370 DIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAP 549
           DIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKLVGDPNLEF  MPAL P
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLP 184

Query: 550 PEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 645
           PEV MD +W               LPDEDE+L
Sbjct: 185 PEVKMDKDWQAQIERDLQEAQATALPDEDEEL 216

>sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase Ran)
          Length = 215

 Score =  360 bits (925), Expect = 2e-99
 Identities = 171/212 (80%), Positives = 184/212 (86%)
 Frame = +1

Query: 10  GDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVW 189
           G+   QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVW
Sbjct: 4   GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVW 63

Query: 190 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKV 369
           DTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKV
Sbjct: 64  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 123

Query: 370 DIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAP 549
           DIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF  MPALAP
Sbjct: 124 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 183

Query: 550 PEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 645
           PE+ MDP+                LPDED+DL
Sbjct: 184 PEILMDPSLAAQYEHDLKVASETALPDEDDDL 215

>sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
          Length = 216

 Score =  360 bits (923), Expect = 4e-99
 Identities = 172/212 (81%), Positives = 182/212 (85%)
 Frame = +1

Query: 10  GDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVW 189
           G+   QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVW
Sbjct: 5   GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 64

Query: 190 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKV 369
           DTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKV
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124

Query: 370 DIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAP 549
           DIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPN EF  MPALAP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAP 184

Query: 550 PEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 645
           PEV MDP                 LPDED+DL
Sbjct: 185 PEVVMDPALAAQYEQDLQHAQATALPDEDDDL 216

>sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase Ran)
          Length = 215

 Score =  359 bits (921), Expect = 6e-99
 Identities = 170/207 (82%), Positives = 182/207 (87%)
 Frame = +1

Query: 25  QFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQ 204
           QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQ
Sbjct: 9   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQ 68

Query: 205 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDR 384
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDR
Sbjct: 69  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128

Query: 385 KVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPM 564
           KVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EM ALAPPE+ M
Sbjct: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAM 188

Query: 565 DPNWVXXXXXXXXXXXXXPLPDEDEDL 645
           DP+                LPDED+DL
Sbjct: 189 DPSLAAQYEHDLKVASETALPDEDDDL 215

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,521,004
Number of Sequences: 369166
Number of extensions: 1967472
Number of successful extensions: 6929
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6303
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00625

  1. Dr_sW_016_J14
  2. Dr_sW_022_G06
  3. Dr_sW_012_I16
  4. Dr_sW_004_A10
  5. Dr_sW_005_J19
  6. Dr_sW_007_G14
  7. Dr_sW_018_A02
  8. Dr_sW_027_E21
  9. Dr_sW_015_D19
  10. Dr_sW_022_B19
  11. Dr_sW_024_C06
  12. Dr_sW_006_E12
  13. Dr_sW_022_M20
  14. Dr_sW_016_L03
  15. Dr_sW_010_C01
  16. Dr_sW_024_K16