Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_C01
(626 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase... 224 2e-58
sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1 221 1e-57
sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase... 221 1e-57
sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran 221 1e-57
sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase... 221 1e-57
sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase... 221 2e-57
sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase... 221 2e-57
sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase... 221 2e-57
sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase... 219 4e-57
sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase... 218 1e-56
>sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 224 bits (570), Expect = 2e-58
Identities = 105/133 (78%), Positives = 112/133 (84%)
Frame = +2
Query: 2 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKN 181
QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKN
Sbjct: 83 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN 142
Query: 182 LQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXX 361
LQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EMPALAPPE+ MDP
Sbjct: 143 LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDPTLAAQYEHDLKV 202
Query: 362 XXXXPLPDEDEDL 400
LPDED+DL
Sbjct: 203 ASETALPDEDDDL 215
>sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1
Length = 215
Score = 221 bits (563), Expect = 1e-57
Identities = 103/133 (77%), Positives = 112/133 (84%)
Frame = +2
Query: 2 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKN 181
QCAIIMFDVT+R+TYKNVPNWHRDL RVCENIPIVL GNKVD+KDRKVKAKTITFHRKKN
Sbjct: 83 QCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKN 142
Query: 182 LQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXX 361
LQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP +
Sbjct: 143 LQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLDN 202
Query: 362 XXXXPLPDEDEDL 400
LPD+D+DL
Sbjct: 203 AAKADLPDDDDDL 215
>sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 221 bits (563), Expect = 1e-57
Identities = 104/133 (78%), Positives = 112/133 (84%)
Frame = +2
Query: 2 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKN 181
QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKN
Sbjct: 83 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN 142
Query: 182 LQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXX 361
LQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPE+ MDP+
Sbjct: 143 LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILMDPSLAAQYEHDLKV 202
Query: 362 XXXXPLPDEDEDL 400
LPDED+DL
Sbjct: 203 ASETALPDEDDDL 215
>sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran
Length = 216
Score = 221 bits (563), Expect = 1e-57
Identities = 104/133 (78%), Positives = 111/133 (83%)
Frame = +2
Query: 2 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKN 181
QCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKN
Sbjct: 84 QCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN 143
Query: 182 LQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXX 361
LQYYD+SAKSNYNFEKPFLW+ARKLVGDPNLEF MPAL PPEV MD +W
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERDLQE 203
Query: 362 XXXXPLPDEDEDL 400
LPDEDE+L
Sbjct: 204 AQATALPDEDEEL 216
>sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 221 bits (563), Expect = 1e-57
Identities = 104/133 (78%), Positives = 112/133 (84%)
Frame = +2
Query: 2 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKN 181
QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKN
Sbjct: 83 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN 142
Query: 182 LQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXX 361
LQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EM ALAPPE+ MDP+
Sbjct: 143 LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAMDPSLAAQYEHDLKV 202
Query: 362 XXXXPLPDEDEDL 400
LPDED+DL
Sbjct: 203 ASETALPDEDDDL 215
>sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
(Androgen receptor-associated protein 24)
sp|P62828|RAN_RAT GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62827|RAN_MOUSE GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62825|RAN_CANFA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 221 bits (562), Expect = 2e-57
Identities = 105/133 (78%), Positives = 111/133 (83%)
Frame = +2
Query: 2 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKN 181
QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKN
Sbjct: 84 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN 143
Query: 182 LQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXX 361
LQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEV 203
Query: 362 XXXXPLPDEDEDL 400
LPDED+DL
Sbjct: 204 AQTTALPDEDDDL 216
>sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 221 bits (562), Expect = 2e-57
Identities = 105/133 (78%), Positives = 111/133 (83%)
Frame = +2
Query: 2 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKN 181
QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKN
Sbjct: 84 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN 143
Query: 182 LQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXX 361
LQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQI 203
Query: 362 XXXXPLPDEDEDL 400
LPDED+DL
Sbjct: 204 AQTTALPDEDDDL 216
>sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 221 bits (562), Expect = 2e-57
Identities = 105/133 (78%), Positives = 111/133 (83%)
Frame = +2
Query: 2 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKN 181
QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKN
Sbjct: 84 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN 143
Query: 182 LQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXX 361
LQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQN 203
Query: 362 XXXXPLPDEDEDL 400
LPDED+DL
Sbjct: 204 AQATALPDEDDDL 216
>sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 219 bits (558), Expect = 4e-57
Identities = 104/133 (78%), Positives = 110/133 (82%)
Frame = +2
Query: 2 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKN 181
QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKN
Sbjct: 84 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN 143
Query: 182 LQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXX 361
LQYYD+SAKSNYNFEKPFLW+ARKL+GDPN EF MPALAPPEV MDP
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVMDPALAAQYEQDLQH 203
Query: 362 XXXXPLPDEDEDL 400
LPDED+DL
Sbjct: 204 AQATALPDEDDDL 216
>sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 215
Score = 218 bits (554), Expect = 1e-56
Identities = 103/133 (77%), Positives = 110/133 (82%)
Frame = +2
Query: 2 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKN 181
QCA MFDVT+R+TYKNVPNWHRDLVRVCENIPIVL GNKVD+KDRKVKAKTITFHRKKN
Sbjct: 83 QCAFNMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKN 142
Query: 182 LQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXX 361
LQYYD+SAKSNYNFEKP LW+ARKL+GDPNLEF MPALAPPEV MDP V
Sbjct: 143 LQYYDISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAA 202
Query: 362 XXXXPLPDEDEDL 400
LPD+DEDL
Sbjct: 203 AANAELPDDDEDL 215
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,537,323
Number of Sequences: 369166
Number of extensions: 1174690
Number of successful extensions: 3445
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3365
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)