Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_J14
(691 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1 365 e-101
sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase... 360 2e-99
sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase... 360 2e-99
sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase... 360 3e-99
sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase... 360 3e-99
sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase... 360 3e-99
sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran 359 3e-99
sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase... 359 4e-99
sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase... 358 7e-99
sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase... 357 1e-98
>sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1
Length = 215
Score = 365 bits (936), Expect = e-101
Identities = 172/211 (81%), Positives = 185/211 (87%)
Frame = +1
Query: 10 GDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVW 189
GD + FKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG+IRFNVW
Sbjct: 4 GDGIPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVW 63
Query: 190 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKV 369
DTAGQEKFGGLRDGYYIQGQCAIIMFDVT+R+TYKNVPNWHRDL RVCENIPIVL GNKV
Sbjct: 64 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKV 123
Query: 370 DIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAP 549
D+KDRKVKAKTITFHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAP
Sbjct: 124 DVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAP 183
Query: 550 PEVPMDPNWVXXXXXXXXXXXXXPLPDEDED 642
PEV MDP + LPD+D+D
Sbjct: 184 PEVQMDPAMIAEYEKDLDNAAKADLPDDDDD 214
>sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 215
Score = 360 bits (924), Expect = 2e-99
Identities = 171/212 (80%), Positives = 184/212 (86%)
Frame = +1
Query: 7 SGDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNV 186
+GD + FKLVLVGDGGTGKTTFVKRH+TG+FEKKYVATLGVEVHPL F+T RG+IRFNV
Sbjct: 3 TGDDIPTFKLVLVGDGGTGKTTFVKRHLTGDFEKKYVATLGVEVHPLIFHTNRGQIRFNV 62
Query: 187 WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNK 366
WDTAGQEKFGGLRDGYYIQGQCA MFDVT+R+TYKNVPNWHRDLVRVCENIPIVL GNK
Sbjct: 63 WDTAGQEKFGGLRDGYYIQGQCAFNMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNK 122
Query: 367 VDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALA 546
VD+KDRKVKAKTITFHRKKNLQYYD+SAKSNYNFEKP LW+ARKL+GDPNLEF MPALA
Sbjct: 123 VDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALA 182
Query: 547 PPEVPMDPNWVXXXXXXXXXXXXXPLPDEDED 642
PPEV MDP V LPD+DED
Sbjct: 183 PPEVQMDPTMVAQYEQEIAAAANAELPDDDED 214
>sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 360 bits (924), Expect = 2e-99
Identities = 170/206 (82%), Positives = 181/206 (87%)
Frame = +1
Query: 25 QFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQ 204
QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQ
Sbjct: 9 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQ 68
Query: 205 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDR 384
EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDR
Sbjct: 69 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
Query: 385 KVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPM 564
KVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EMPALAPPE+ M
Sbjct: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAM 188
Query: 565 DPNWVXXXXXXXXXXXXXPLPDEDED 642
DP LPDED+D
Sbjct: 189 DPTLAAQYEHDLKVASETALPDEDDD 214
>sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
(Androgen receptor-associated protein 24)
sp|P62828|RAN_RAT GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62827|RAN_MOUSE GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62825|RAN_CANFA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 360 bits (923), Expect = 3e-99
Identities = 172/211 (81%), Positives = 182/211 (86%)
Frame = +1
Query: 10 GDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVW 189
G+ QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVW
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 64
Query: 190 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKV 369
DTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKV
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 370 DIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAP 549
DIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184
Query: 550 PEVPMDPNWVXXXXXXXXXXXXXPLPDEDED 642
PEV MDP LPDED+D
Sbjct: 185 PEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215
>sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 360 bits (923), Expect = 3e-99
Identities = 172/211 (81%), Positives = 182/211 (86%)
Frame = +1
Query: 10 GDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVW 189
G+ QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVW
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 64
Query: 190 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKV 369
DTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKV
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 370 DIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAP 549
DIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184
Query: 550 PEVPMDPNWVXXXXXXXXXXXXXPLPDEDED 642
PEV MDP LPDED+D
Sbjct: 185 PEVVMDPALAAQYEQDLQIAQTTALPDEDDD 215
>sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 360 bits (923), Expect = 3e-99
Identities = 172/211 (81%), Positives = 182/211 (86%)
Frame = +1
Query: 10 GDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVW 189
G+ QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVW
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 64
Query: 190 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKV 369
DTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKV
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 370 DIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAP 549
DIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 184
Query: 550 PEVPMDPNWVXXXXXXXXXXXXXPLPDEDED 642
PEV MDP LPDED+D
Sbjct: 185 PEVVMDPALAAQYEQDLQNAQATALPDEDDD 215
>sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran
Length = 216
Score = 359 bits (922), Expect = 3e-99
Identities = 171/211 (81%), Positives = 181/211 (85%)
Frame = +1
Query: 10 GDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVW 189
G + FK VLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG IRFNVW
Sbjct: 5 GQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVW 64
Query: 190 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKV 369
DTAGQEKFGGLRDGYYIQGQCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKV
Sbjct: 65 DTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 370 DIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAP 549
DIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKLVGDPNLEF MPAL P
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLP 184
Query: 550 PEVPMDPNWVXXXXXXXXXXXXXPLPDEDED 642
PEV MD +W LPDEDE+
Sbjct: 185 PEVKMDKDWQAQIERDLQEAQATALPDEDEE 215
>sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 359 bits (921), Expect = 4e-99
Identities = 170/211 (80%), Positives = 183/211 (86%)
Frame = +1
Query: 10 GDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVW 189
G+ QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVW
Sbjct: 4 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVW 63
Query: 190 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKV 369
DTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKV
Sbjct: 64 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 123
Query: 370 DIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAP 549
DIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAP
Sbjct: 124 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAP 183
Query: 550 PEVPMDPNWVXXXXXXXXXXXXXPLPDEDED 642
PE+ MDP+ LPDED+D
Sbjct: 184 PEILMDPSLAAQYEHDLKVASETALPDEDDD 214
>sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 358 bits (919), Expect = 7e-99
Identities = 171/211 (81%), Positives = 181/211 (85%)
Frame = +1
Query: 10 GDVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVW 189
G+ QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVW
Sbjct: 5 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 64
Query: 190 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKV 369
DTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKV
Sbjct: 65 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKV 124
Query: 370 DIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAP 549
DIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPN EF MPALAP
Sbjct: 125 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAP 184
Query: 550 PEVPMDPNWVXXXXXXXXXXXXXPLPDEDED 642
PEV MDP LPDED+D
Sbjct: 185 PEVVMDPALAAQYEQDLQHAQATALPDEDDD 215
>sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 357 bits (917), Expect = 1e-98
Identities = 169/206 (82%), Positives = 181/206 (87%)
Frame = +1
Query: 25 QFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQ 204
QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQ
Sbjct: 9 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQ 68
Query: 205 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDR 384
EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDR
Sbjct: 69 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
Query: 385 KVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPM 564
KVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EM ALAPPE+ M
Sbjct: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAM 188
Query: 565 DPNWVXXXXXXXXXXXXXPLPDEDED 642
DP+ LPDED+D
Sbjct: 189 DPSLAAQYEHDLKVASETALPDEDDD 214
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,118,741
Number of Sequences: 369166
Number of extensions: 1672774
Number of successful extensions: 6488
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5863
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5927776870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)