Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_C06
(645 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1 343 3e-94
sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran 342 6e-94
sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase... 340 2e-93
sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase... 338 7e-93
sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase... 338 7e-93
sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase... 338 7e-93
sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase... 338 9e-93
sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase... 337 1e-92
sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase... 337 1e-92
sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase... 337 2e-92
>sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1
Length = 215
Score = 343 bits (879), Expect = 3e-94
Identities = 161/196 (82%), Positives = 173/196 (88%)
Frame = +3
Query: 3 TGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYY 182
TGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG+IRFNVWDTAGQEKFGGLRDGYY
Sbjct: 20 TGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYY 79
Query: 183 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHR 362
IQGQCAIIMFDVT+R+TYKNVPNWHRDL RVCENIPIVL GNKVD+KDRKVKAKTITFHR
Sbjct: 80 IQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKDRKVKAKTITFHR 139
Query: 363 KKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXX 542
KKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP +
Sbjct: 140 KKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKD 199
Query: 543 XXXXXXXPLPDEDEDL 590
LPD+D+DL
Sbjct: 200 LDNAAKADLPDDDDDL 215
>sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran
Length = 216
Score = 342 bits (876), Expect = 6e-94
Identities = 162/196 (82%), Positives = 171/196 (87%)
Frame = +3
Query: 3 TGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYY 182
TGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG IRFNVWDTAGQEKFGGLRDGYY
Sbjct: 21 TGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTAGQEKFGGLRDGYY 80
Query: 183 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHR 362
IQGQCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHR
Sbjct: 81 IQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 140
Query: 363 KKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXX 542
KKNLQYYD+SAKSNYNFEKPFLW+ARKLVGDPNLEF MPAL PPEV MD +W
Sbjct: 141 KKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERD 200
Query: 543 XXXXXXXPLPDEDEDL 590
LPDEDE+L
Sbjct: 201 LQEAQATALPDEDEEL 216
>sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 340 bits (872), Expect = 2e-93
Identities = 160/196 (81%), Positives = 171/196 (87%)
Frame = +3
Query: 3 TGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYY 182
TGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQEKFGGLRDGYY
Sbjct: 20 TGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYY 79
Query: 183 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHR 362
IQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHR
Sbjct: 80 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 139
Query: 363 KKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXX 542
KKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EMPALAPPE+ MDP
Sbjct: 140 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDPTLAAQYEHD 199
Query: 543 XXXXXXXPLPDEDEDL 590
LPDED+DL
Sbjct: 200 LKVASETALPDEDDDL 215
>sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
(Androgen receptor-associated protein 24)
sp|P62828|RAN_RAT GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62827|RAN_MOUSE GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62825|RAN_CANFA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 338 bits (867), Expect = 7e-93
Identities = 161/196 (82%), Positives = 170/196 (86%)
Frame = +3
Query: 3 TGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYY 182
TGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEKFGGLRDGYY
Sbjct: 21 TGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYY 80
Query: 183 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHR 362
IQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHR
Sbjct: 81 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 140
Query: 363 KKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXX 542
KKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 141 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHD 200
Query: 543 XXXXXXXPLPDEDEDL 590
LPDED+DL
Sbjct: 201 LEVAQTTALPDEDDDL 216
>sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 338 bits (867), Expect = 7e-93
Identities = 161/196 (82%), Positives = 170/196 (86%)
Frame = +3
Query: 3 TGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYY 182
TGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEKFGGLRDGYY
Sbjct: 21 TGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYY 80
Query: 183 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHR 362
IQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHR
Sbjct: 81 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 140
Query: 363 KKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXX 542
KKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 141 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQD 200
Query: 543 XXXXXXXPLPDEDEDL 590
LPDED+DL
Sbjct: 201 LQIAQTTALPDEDDDL 216
>sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 338 bits (867), Expect = 7e-93
Identities = 161/196 (82%), Positives = 170/196 (86%)
Frame = +3
Query: 3 TGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYY 182
TGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEKFGGLRDGYY
Sbjct: 21 TGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYY 80
Query: 183 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHR 362
IQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHR
Sbjct: 81 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 140
Query: 363 KKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXX 542
KKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 141 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQD 200
Query: 543 XXXXXXXPLPDEDEDL 590
LPDED+DL
Sbjct: 201 LQNAQATALPDEDDDL 216
>sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 215
Score = 338 bits (866), Expect = 9e-93
Identities = 160/196 (81%), Positives = 171/196 (87%)
Frame = +3
Query: 3 TGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYY 182
TGKTTFVKRH+TG+FEKKYVATLGVEVHPL F+T RG+IRFNVWDTAGQEKFGGLRDGYY
Sbjct: 20 TGKTTFVKRHLTGDFEKKYVATLGVEVHPLIFHTNRGQIRFNVWDTAGQEKFGGLRDGYY 79
Query: 183 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHR 362
IQGQCA MFDVT+R+TYKNVPNWHRDLVRVCENIPIVL GNKVD+KDRKVKAKTITFHR
Sbjct: 80 IQGQCAFNMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKTITFHR 139
Query: 363 KKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXX 542
KKNLQYYD+SAKSNYNFEKP LW+ARKL+GDPNLEF MPALAPPEV MDP V
Sbjct: 140 KKNLQYYDISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQE 199
Query: 543 XXXXXXXPLPDEDEDL 590
LPD+DEDL
Sbjct: 200 IAAAANAELPDDDEDL 215
>sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 337 bits (865), Expect = 1e-92
Identities = 159/196 (81%), Positives = 171/196 (87%)
Frame = +3
Query: 3 TGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYY 182
TGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQEKFGGLRDGYY
Sbjct: 20 TGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYY 79
Query: 183 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHR 362
IQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHR
Sbjct: 80 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 139
Query: 363 KKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXX 542
KKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPE+ MDP+
Sbjct: 140 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILMDPSLAAQYEHD 199
Query: 543 XXXXXXXPLPDEDEDL 590
LPDED+DL
Sbjct: 200 LKVASETALPDEDDDL 215
>sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 337 bits (865), Expect = 1e-92
Identities = 159/196 (81%), Positives = 171/196 (87%)
Frame = +3
Query: 3 TGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYY 182
TGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQEKFGGLRDGYY
Sbjct: 20 TGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQEKFGGLRDGYY 79
Query: 183 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHR 362
IQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHR
Sbjct: 80 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 139
Query: 363 KKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXX 542
KKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EM ALAPPE+ MDP+
Sbjct: 140 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAMDPSLAAQYEHD 199
Query: 543 XXXXXXXPLPDEDEDL 590
LPDED+DL
Sbjct: 200 LKVASETALPDEDDDL 215
>sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 337 bits (863), Expect = 2e-92
Identities = 160/196 (81%), Positives = 169/196 (86%)
Frame = +3
Query: 3 TGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYY 182
TGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEKFGGLRDGYY
Sbjct: 21 TGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYY 80
Query: 183 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHR 362
IQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHR
Sbjct: 81 IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR 140
Query: 363 KKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXX 542
KKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPN EF MPALAPPEV MDP
Sbjct: 141 KKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVMDPALAAQYEQD 200
Query: 543 XXXXXXXPLPDEDEDL 590
LPDED+DL
Sbjct: 201 LQHAQATALPDEDDDL 216
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,508,775
Number of Sequences: 369166
Number of extensions: 1531823
Number of successful extensions: 4701
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4340
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)