Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_A10
(251 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase... 96 2e-20
sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran 94 1e-19
sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase... 94 1e-19
sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase... 94 1e-19
sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1 93 2e-19
sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase... 93 2e-19
sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase... 93 2e-19
sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase... 93 2e-19
sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase... 92 3e-19
sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase... 92 5e-19
>sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 96.3 bits (238), Expect = 2e-20
Identities = 44/68 (64%), Positives = 49/68 (72%)
Frame = +3
Query: 3 VSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXP 182
+SAKSNYNFEKPFLW+ARKL+GDPNLEF EMPALAPPE+ MDP
Sbjct: 148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDPTLAAQYEHDLKVASETA 207
Query: 183 LPDEDEDL 206
LPDED+DL
Sbjct: 208 LPDEDDDL 215
>sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran
Length = 216
Score = 94.0 bits (232), Expect = 1e-19
Identities = 44/68 (64%), Positives = 48/68 (70%)
Frame = +3
Query: 3 VSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXP 182
+SAKSNYNFEKPFLW+ARKLVGDPNLEF MPAL PPEV MD +W
Sbjct: 149 ISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERDLQEAQATA 208
Query: 183 LPDEDEDL 206
LPDEDE+L
Sbjct: 209 LPDEDEEL 216
>sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 93.6 bits (231), Expect = 1e-19
Identities = 43/68 (63%), Positives = 49/68 (72%)
Frame = +3
Query: 3 VSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXP 182
+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPE+ MDP+
Sbjct: 148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILMDPSLAAQYEHDLKVASETA 207
Query: 183 LPDEDEDL 206
LPDED+DL
Sbjct: 208 LPDEDDDL 215
>sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 93.6 bits (231), Expect = 1e-19
Identities = 43/68 (63%), Positives = 49/68 (72%)
Frame = +3
Query: 3 VSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXP 182
+SAKSNYNFEKPFLW+ARKL+GDPNLEF EM ALAPPE+ MDP+
Sbjct: 148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAMDPSLAAQYEHDLKVASETA 207
Query: 183 LPDEDEDL 206
LPDED+DL
Sbjct: 208 LPDEDDDL 215
>sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1
Length = 215
Score = 93.2 bits (230), Expect = 2e-19
Identities = 43/68 (63%), Positives = 49/68 (72%)
Frame = +3
Query: 3 VSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXP 182
+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP +
Sbjct: 148 ISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLDNAAKAD 207
Query: 183 LPDEDEDL 206
LPD+D+DL
Sbjct: 208 LPDDDDDL 215
>sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
(Androgen receptor-associated protein 24)
sp|P62828|RAN_RAT GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62827|RAN_MOUSE GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62825|RAN_CANFA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 93.2 bits (230), Expect = 2e-19
Identities = 44/68 (64%), Positives = 48/68 (70%)
Frame = +3
Query: 3 VSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXP 182
+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTA 208
Query: 183 LPDEDEDL 206
LPDED+DL
Sbjct: 209 LPDEDDDL 216
>sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 93.2 bits (230), Expect = 2e-19
Identities = 44/68 (64%), Positives = 48/68 (70%)
Frame = +3
Query: 3 VSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXP 182
+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQIAQTTA 208
Query: 183 LPDEDEDL 206
LPDED+DL
Sbjct: 209 LPDEDDDL 216
>sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 93.2 bits (230), Expect = 2e-19
Identities = 44/68 (64%), Positives = 48/68 (70%)
Frame = +3
Query: 3 VSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXP 182
+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQNAQATA 208
Query: 183 LPDEDEDL 206
LPDED+DL
Sbjct: 209 LPDEDDDL 216
>sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 215
Score = 92.4 bits (228), Expect = 3e-19
Identities = 44/68 (64%), Positives = 48/68 (70%)
Frame = +3
Query: 3 VSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXP 182
+SAKSNYNFEKP LW+ARKL+GDPNLEF MPALAPPEV MDP V
Sbjct: 148 ISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAE 207
Query: 183 LPDEDEDL 206
LPD+DEDL
Sbjct: 208 LPDDDEDL 215
>sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 91.7 bits (226), Expect = 5e-19
Identities = 43/68 (63%), Positives = 47/68 (69%)
Frame = +3
Query: 3 VSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXP 182
+SAKSNYNFEKPFLW+ARKL+GDPN EF MPALAPPEV MDP
Sbjct: 149 ISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVMDPALAAQYEQDLQHAQATA 208
Query: 183 LPDEDEDL 206
LPDED+DL
Sbjct: 209 LPDEDDDL 216
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,787,116
Number of Sequences: 369166
Number of extensions: 415669
Number of successful extensions: 992
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)