Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_L03
(714 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1 358 6e-99
sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase... 356 4e-98
sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran 355 5e-98
sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase... 354 1e-97
sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase... 354 1e-97
sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase... 354 1e-97
sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase... 353 2e-97
sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase... 353 3e-97
sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase... 353 3e-97
sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase... 352 4e-97
>sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1
Length = 215
Score = 358 bits (920), Expect = 6e-99
Identities = 169/204 (82%), Positives = 181/204 (88%)
Frame = +3
Query: 3 KLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEK 182
KLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG+IRFNVWDTAGQEK
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEK 70
Query: 183 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKV 362
FGGLRDGYYIQGQCAIIMFDVT+R+TYKNVPNWHRDL RVCENIPIVL GNKVD+KDRKV
Sbjct: 71 FGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKDRKV 130
Query: 363 KAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDP 542
KAKTITFHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 131 KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDP 190
Query: 543 NWVXXXXXXXXXXXXXPLPDEDED 614
+ LPD+D+D
Sbjct: 191 AMIAEYEKDLDNAAKADLPDDDDD 214
>sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 356 bits (913), Expect = 4e-98
Identities = 168/204 (82%), Positives = 179/204 (87%)
Frame = +3
Query: 3 KLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEK 182
KLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQEK
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEK 70
Query: 183 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKV 362
FGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKV
Sbjct: 71 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 130
Query: 363 KAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDP 542
KAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EMPALAPPE+ MDP
Sbjct: 131 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDP 190
Query: 543 NWVXXXXXXXXXXXXXPLPDEDED 614
LPDED+D
Sbjct: 191 TLAAQYEHDLKVASETALPDEDDD 214
>sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran
Length = 216
Score = 355 bits (912), Expect = 5e-98
Identities = 169/204 (82%), Positives = 178/204 (87%)
Frame = +3
Query: 3 KLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEK 182
K VLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG IRFNVWDTAGQEK
Sbjct: 12 KCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTAGQEK 71
Query: 183 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKV 362
FGGLRDGYYIQGQCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKV
Sbjct: 72 FGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 131
Query: 363 KAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDP 542
KAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKLVGDPNLEF MPAL PPEV MD
Sbjct: 132 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDK 191
Query: 543 NWVXXXXXXXXXXXXXPLPDEDED 614
+W LPDEDE+
Sbjct: 192 DWQAQIERDLQEAQATALPDEDEE 215
>sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
(Androgen receptor-associated protein 24)
sp|P62828|RAN_RAT GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62827|RAN_MOUSE GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62825|RAN_CANFA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 354 bits (908), Expect = 1e-97
Identities = 169/204 (82%), Positives = 178/204 (87%)
Frame = +3
Query: 3 KLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEK 182
KLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEK
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 183 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKV 362
FGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKV
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 131
Query: 363 KAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDP 542
KAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 132 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDP 191
Query: 543 NWVXXXXXXXXXXXXXPLPDEDED 614
LPDED+D
Sbjct: 192 ALAAQYEHDLEVAQTTALPDEDDD 215
>sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 354 bits (908), Expect = 1e-97
Identities = 169/204 (82%), Positives = 178/204 (87%)
Frame = +3
Query: 3 KLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEK 182
KLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEK
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 183 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKV 362
FGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKV
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 131
Query: 363 KAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDP 542
KAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 132 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDP 191
Query: 543 NWVXXXXXXXXXXXXXPLPDEDED 614
LPDED+D
Sbjct: 192 ALAAQYEQDLQIAQTTALPDEDDD 215
>sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 354 bits (908), Expect = 1e-97
Identities = 169/204 (82%), Positives = 178/204 (87%)
Frame = +3
Query: 3 KLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEK 182
KLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEK
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 183 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKV 362
FGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKV
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 131
Query: 363 KAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDP 542
KAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 132 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDP 191
Query: 543 NWVXXXXXXXXXXXXXPLPDEDED 614
LPDED+D
Sbjct: 192 ALAAQYEQDLQNAQATALPDEDDD 215
>sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 215
Score = 353 bits (907), Expect = 2e-97
Identities = 168/204 (82%), Positives = 179/204 (87%)
Frame = +3
Query: 3 KLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEK 182
KLVLVGDGGTGKTTFVKRH+TG+FEKKYVATLGVEVHPL F+T RG+IRFNVWDTAGQEK
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGDFEKKYVATLGVEVHPLIFHTNRGQIRFNVWDTAGQEK 70
Query: 183 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKV 362
FGGLRDGYYIQGQCA MFDVT+R+TYKNVPNWHRDLVRVCENIPIVL GNKVD+KDRKV
Sbjct: 71 FGGLRDGYYIQGQCAFNMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKV 130
Query: 363 KAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDP 542
KAKTITFHRKKNLQYYD+SAKSNYNFEKP LW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 131 KAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPPEVQMDP 190
Query: 543 NWVXXXXXXXXXXXXXPLPDEDED 614
V LPD+DED
Sbjct: 191 TMVAQYEQEIAAAANAELPDDDED 214
>sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 353 bits (906), Expect = 3e-97
Identities = 167/204 (81%), Positives = 179/204 (87%)
Frame = +3
Query: 3 KLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEK 182
KLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQEK
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEK 70
Query: 183 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKV 362
FGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKV
Sbjct: 71 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 130
Query: 363 KAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDP 542
KAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPE+ MDP
Sbjct: 131 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILMDP 190
Query: 543 NWVXXXXXXXXXXXXXPLPDEDED 614
+ LPDED+D
Sbjct: 191 SLAAQYEHDLKVASETALPDEDDD 214
>sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 353 bits (906), Expect = 3e-97
Identities = 167/204 (81%), Positives = 179/204 (87%)
Frame = +3
Query: 3 KLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEK 182
KLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQEK
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQEK 70
Query: 183 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKV 362
FGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKV
Sbjct: 71 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 130
Query: 363 KAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDP 542
KAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EM ALAPPE+ MDP
Sbjct: 131 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAMDP 190
Query: 543 NWVXXXXXXXXXXXXXPLPDEDED 614
+ LPDED+D
Sbjct: 191 SLAAQYEHDLKVASETALPDEDDD 214
>sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 352 bits (904), Expect = 4e-97
Identities = 168/204 (82%), Positives = 177/204 (86%)
Frame = +3
Query: 3 KLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEK 182
KLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEK
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 183 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKV 362
FGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKV
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 131
Query: 363 KAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDP 542
KAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPN EF MPALAPPEV MDP
Sbjct: 132 KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVMDP 191
Query: 543 NWVXXXXXXXXXXXXXPLPDEDED 614
LPDED+D
Sbjct: 192 ALAAQYEQDLQHAQATALPDEDDD 215
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,147,288
Number of Sequences: 369166
Number of extensions: 1656435
Number of successful extensions: 6262
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5671
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6316483550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)