Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_J19
(680 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1 364 e-100
sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase... 362 e-100
sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase... 360 2e-99
sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase... 360 2e-99
sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran 360 2e-99
sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase... 360 2e-99
sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase... 359 4e-99
sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase... 359 4e-99
sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase... 359 4e-99
sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase... 358 7e-99
>sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1
Length = 215
Score = 364 bits (934), Expect = e-100
Identities = 172/211 (81%), Positives = 185/211 (87%)
Frame = +3
Query: 3 DVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWD 182
D + FKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG+IRFNVWD
Sbjct: 5 DGIPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWD 64
Query: 183 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVD 362
TAGQEKFGGLRDGYYIQGQCAIIMFDVT+R+TYKNVPNWHRDL RVCENIPIVL GNKVD
Sbjct: 65 TAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVD 124
Query: 363 IKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPP 542
+KDRKVKAKTITFHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPP
Sbjct: 125 VKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPP 184
Query: 543 EVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 635
EV MDP + LPD+D+DL
Sbjct: 185 EVQMDPAMIAEYEKDLDNAAKADLPDDDDDL 215
>sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 362 bits (928), Expect = e-100
Identities = 171/207 (82%), Positives = 182/207 (87%)
Frame = +3
Query: 15 QFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQ 194
QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQ
Sbjct: 9 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQ 68
Query: 195 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDR 374
EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDR
Sbjct: 69 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
Query: 375 KVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPM 554
KVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EMPALAPPE+ M
Sbjct: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAM 188
Query: 555 DPNWVXXXXXXXXXXXXXPLPDEDEDL 635
DP LPDED+DL
Sbjct: 189 DPTLAAQYEHDLKVASETALPDEDDDL 215
>sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
(Androgen receptor-associated protein 24)
sp|P62828|RAN_RAT GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62827|RAN_MOUSE GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62825|RAN_CANFA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 360 bits (923), Expect = 2e-99
Identities = 172/207 (83%), Positives = 181/207 (87%)
Frame = +3
Query: 15 QFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQ 194
QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 195 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDR 374
EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDR
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 375 KVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPM 554
KVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 555 DPNWVXXXXXXXXXXXXXPLPDEDEDL 635
DP LPDED+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216
>sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 360 bits (923), Expect = 2e-99
Identities = 172/207 (83%), Positives = 181/207 (87%)
Frame = +3
Query: 15 QFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQ 194
QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 195 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDR 374
EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDR
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 375 KVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPM 554
KVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 555 DPNWVXXXXXXXXXXXXXPLPDEDEDL 635
DP LPDED+DL
Sbjct: 190 DPALAAQYEQDLQIAQTTALPDEDDDL 216
>sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran
Length = 216
Score = 360 bits (923), Expect = 2e-99
Identities = 171/209 (81%), Positives = 181/209 (86%)
Frame = +3
Query: 9 VAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTA 188
+ FK VLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG IRFNVWDTA
Sbjct: 8 IPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTA 67
Query: 189 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIK 368
GQEKFGGLRDGYYIQGQCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIK
Sbjct: 68 GQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 369 DRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEV 548
DRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKLVGDPNLEF MPAL PPEV
Sbjct: 128 DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEV 187
Query: 549 PMDPNWVXXXXXXXXXXXXXPLPDEDEDL 635
MD +W LPDEDE+L
Sbjct: 188 KMDKDWQAQIERDLQEAQATALPDEDEEL 216
>sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 360 bits (923), Expect = 2e-99
Identities = 172/207 (83%), Positives = 181/207 (87%)
Frame = +3
Query: 15 QFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQ 194
QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 195 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDR 374
EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDR
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 375 KVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPM 554
KVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 555 DPNWVXXXXXXXXXXXXXPLPDEDEDL 635
DP LPDED+DL
Sbjct: 190 DPALAAQYEQDLQNAQATALPDEDDDL 216
>sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 215
Score = 359 bits (921), Expect = 4e-99
Identities = 171/211 (81%), Positives = 183/211 (86%)
Frame = +3
Query: 3 DVVAQFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWD 182
D + FKLVLVGDGGTGKTTFVKRH+TG+FEKKYVATLGVEVHPL F+T RG+IRFNVWD
Sbjct: 5 DDIPTFKLVLVGDGGTGKTTFVKRHLTGDFEKKYVATLGVEVHPLIFHTNRGQIRFNVWD 64
Query: 183 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVD 362
TAGQEKFGGLRDGYYIQGQCA MFDVT+R+TYKNVPNWHRDLVRVCENIPIVL GNKVD
Sbjct: 65 TAGQEKFGGLRDGYYIQGQCAFNMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVD 124
Query: 363 IKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPP 542
+KDRKVKAKTITFHRKKNLQYYD+SAKSNYNFEKP LW+ARKL+GDPNLEF MPALAPP
Sbjct: 125 VKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPP 184
Query: 543 EVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 635
EV MDP V LPD+DEDL
Sbjct: 185 EVQMDPTMVAQYEQEIAAAANAELPDDDEDL 215
>sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 359 bits (921), Expect = 4e-99
Identities = 170/207 (82%), Positives = 182/207 (87%)
Frame = +3
Query: 15 QFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQ 194
QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQ
Sbjct: 9 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQ 68
Query: 195 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDR 374
EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDR
Sbjct: 69 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
Query: 375 KVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPM 554
KVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPE+ M
Sbjct: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILM 188
Query: 555 DPNWVXXXXXXXXXXXXXPLPDEDEDL 635
DP+ LPDED+DL
Sbjct: 189 DPSLAAQYEHDLKVASETALPDEDDDL 215
>sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 359 bits (921), Expect = 4e-99
Identities = 170/207 (82%), Positives = 182/207 (87%)
Frame = +3
Query: 15 QFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQ 194
QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQ
Sbjct: 9 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQ 68
Query: 195 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDR 374
EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDR
Sbjct: 69 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
Query: 375 KVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPM 554
KVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EM ALAPPE+ M
Sbjct: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAM 188
Query: 555 DPNWVXXXXXXXXXXXXXPLPDEDEDL 635
DP+ LPDED+DL
Sbjct: 189 DPSLAAQYEHDLKVASETALPDEDDDL 215
>sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 358 bits (919), Expect = 7e-99
Identities = 171/207 (82%), Positives = 180/207 (86%)
Frame = +3
Query: 15 QFKLVLVGDGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQ 194
QFKLVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQ
Sbjct: 10 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 195 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDR 374
EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDR
Sbjct: 70 EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 375 KVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPM 554
KVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPN EF MPALAPPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVM 189
Query: 555 DPNWVXXXXXXXXXXXXXPLPDEDEDL 635
DP LPDED+DL
Sbjct: 190 DPALAAQYEQDLQHAQATALPDEDDDL 216
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,312,395
Number of Sequences: 369166
Number of extensions: 1658806
Number of successful extensions: 6405
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5779
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)