Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_M20
(315 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase... 109 2e-24
sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran 107 8e-24
sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase... 107 1e-23
sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase... 107 1e-23
sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1 106 1e-23
sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase... 106 1e-23
sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase... 106 1e-23
sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase... 106 1e-23
sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase... 105 2e-23
sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase... 105 4e-23
>sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 109 bits (273), Expect = 2e-24
Identities = 50/74 (67%), Positives = 55/74 (74%)
Frame = +3
Query: 3 NLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXX 182
NLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EMPALAPPE+ MDP
Sbjct: 142 NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDPTLAAQYEHDLK 201
Query: 183 XXXXXPLPDEDEDL 224
LPDED+DL
Sbjct: 202 VASETALPDEDDDL 215
>sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran
Length = 216
Score = 107 bits (267), Expect = 8e-24
Identities = 50/74 (67%), Positives = 54/74 (72%)
Frame = +3
Query: 3 NLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXX 182
NLQYYD+SAKSNYNFEKPFLW+ARKLVGDPNLEF MPAL PPEV MD +W
Sbjct: 143 NLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERDLQ 202
Query: 183 XXXXXPLPDEDEDL 224
LPDEDE+L
Sbjct: 203 EAQATALPDEDEEL 216
>sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 107 bits (266), Expect = 1e-23
Identities = 49/74 (66%), Positives = 55/74 (74%)
Frame = +3
Query: 3 NLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXX 182
NLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPE+ MDP+
Sbjct: 142 NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILMDPSLAAQYEHDLK 201
Query: 183 XXXXXPLPDEDEDL 224
LPDED+DL
Sbjct: 202 VASETALPDEDDDL 215
>sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 107 bits (266), Expect = 1e-23
Identities = 49/74 (66%), Positives = 55/74 (74%)
Frame = +3
Query: 3 NLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXX 182
NLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EM ALAPPE+ MDP+
Sbjct: 142 NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAMDPSLAAQYEHDLK 201
Query: 183 XXXXXPLPDEDEDL 224
LPDED+DL
Sbjct: 202 VASETALPDEDDDL 215
>sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1
Length = 215
Score = 106 bits (265), Expect = 1e-23
Identities = 49/74 (66%), Positives = 55/74 (74%)
Frame = +3
Query: 3 NLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXX 182
NLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP +
Sbjct: 142 NLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLD 201
Query: 183 XXXXXPLPDEDEDL 224
LPD+D+DL
Sbjct: 202 NAAKADLPDDDDDL 215
>sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
(Androgen receptor-associated protein 24)
sp|P62828|RAN_RAT GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62827|RAN_MOUSE GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62825|RAN_CANFA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 106 bits (265), Expect = 1e-23
Identities = 50/74 (67%), Positives = 54/74 (72%)
Frame = +3
Query: 3 NLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXX 182
NLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 143 NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLE 202
Query: 183 XXXXXPLPDEDEDL 224
LPDED+DL
Sbjct: 203 VAQTTALPDEDDDL 216
>sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 106 bits (265), Expect = 1e-23
Identities = 50/74 (67%), Positives = 54/74 (72%)
Frame = +3
Query: 3 NLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXX 182
NLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 143 NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQ 202
Query: 183 XXXXXPLPDEDEDL 224
LPDED+DL
Sbjct: 203 IAQTTALPDEDDDL 216
>sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 106 bits (265), Expect = 1e-23
Identities = 50/74 (67%), Positives = 54/74 (72%)
Frame = +3
Query: 3 NLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXX 182
NLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 143 NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQ 202
Query: 183 XXXXXPLPDEDEDL 224
LPDED+DL
Sbjct: 203 NAQATALPDEDDDL 216
>sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 215
Score = 105 bits (263), Expect = 2e-23
Identities = 50/74 (67%), Positives = 54/74 (72%)
Frame = +3
Query: 3 NLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXX 182
NLQYYD+SAKSNYNFEKP LW+ARKL+GDPNLEF MPALAPPEV MDP V
Sbjct: 142 NLQYYDISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIA 201
Query: 183 XXXXXPLPDEDEDL 224
LPD+DEDL
Sbjct: 202 AAANAELPDDDEDL 215
>sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 105 bits (261), Expect = 4e-23
Identities = 49/74 (66%), Positives = 53/74 (71%)
Frame = +3
Query: 3 NLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXX 182
NLQYYD+SAKSNYNFEKPFLW+ARKL+GDPN EF MPALAPPEV MDP
Sbjct: 143 NLQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVMDPALAAQYEQDLQ 202
Query: 183 XXXXXPLPDEDEDL 224
LPDED+DL
Sbjct: 203 HAQATALPDEDDDL 216
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,092,815
Number of Sequences: 369166
Number of extensions: 499442
Number of successful extensions: 1172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)