Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_D19
(396 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase... 184 7e-47
sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase... 183 1e-46
sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1 182 2e-46
sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran 181 4e-46
sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase... 181 5e-46
sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase... 181 5e-46
sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase... 181 6e-46
sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase... 181 6e-46
sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase... 181 6e-46
sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase... 179 2e-45
>sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 184 bits (466), Expect = 7e-47
Identities = 86/113 (76%), Positives = 92/113 (81%)
Frame = +3
Query: 3 WHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLW 182
WHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW
Sbjct: 103 WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162
Query: 183 IARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 341
+ARKL+GDPNLEF EMPALAPPE+ MDP LPDED+DL
Sbjct: 163 LARKLIGDPNLEFVEMPALAPPEIAMDPTLAAQYEHDLKVASETALPDEDDDL 215
>sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 215
Score = 183 bits (464), Expect = 1e-46
Identities = 87/113 (76%), Positives = 92/113 (81%)
Frame = +3
Query: 3 WHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLW 182
WHRDLVRVCENIPIVL GNKVD+KDRKVKAKTITFHRKKNLQYYD+SAKSNYNFEKP LW
Sbjct: 103 WHRDLVRVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLW 162
Query: 183 IARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 341
+ARKL+GDPNLEF MPALAPPEV MDP V LPD+DEDL
Sbjct: 163 LARKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAELPDDDEDL 215
>sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1
Length = 215
Score = 182 bits (462), Expect = 2e-46
Identities = 85/113 (75%), Positives = 92/113 (81%)
Frame = +3
Query: 3 WHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLW 182
WHRDL RVCENIPIVL GNKVD+KDRKVKAKTITFHRKKNLQYYD+SAKSNYNFEKPFLW
Sbjct: 103 WHRDLARVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLW 162
Query: 183 IARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 341
+ARKL+GDPNLEF MPALAPPEV MDP + LPD+D+DL
Sbjct: 163 LARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLDNAAKADLPDDDDDL 215
>sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran
Length = 216
Score = 181 bits (460), Expect = 4e-46
Identities = 86/113 (76%), Positives = 91/113 (80%)
Frame = +3
Query: 3 WHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLW 182
WHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW
Sbjct: 104 WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 163
Query: 183 IARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 341
+ARKLVGDPNLEF MPAL PPEV MD +W LPDEDE+L
Sbjct: 164 LARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERDLQEAQATALPDEDEEL 216
>sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 181 bits (459), Expect = 5e-46
Identities = 85/113 (75%), Positives = 92/113 (81%)
Frame = +3
Query: 3 WHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLW 182
WHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW
Sbjct: 103 WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162
Query: 183 IARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 341
+ARKL+GDPNLEF MPALAPPE+ MDP+ LPDED+DL
Sbjct: 163 LARKLIGDPNLEFVAMPALAPPEILMDPSLAAQYEHDLKVASETALPDEDDDL 215
>sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 181 bits (459), Expect = 5e-46
Identities = 85/113 (75%), Positives = 92/113 (81%)
Frame = +3
Query: 3 WHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLW 182
WHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW
Sbjct: 103 WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 162
Query: 183 IARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 341
+ARKL+GDPNLEF EM ALAPPE+ MDP+ LPDED+DL
Sbjct: 163 LARKLIGDPNLEFVEMSALAPPEIAMDPSLAAQYEHDLKVASETALPDEDDDL 215
>sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
(Androgen receptor-associated protein 24)
sp|P62828|RAN_RAT GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62827|RAN_MOUSE GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62825|RAN_CANFA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 181 bits (458), Expect = 6e-46
Identities = 86/113 (76%), Positives = 91/113 (80%)
Frame = +3
Query: 3 WHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLW 182
WHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW
Sbjct: 104 WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 163
Query: 183 IARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 341
+ARKL+GDPNLEF MPALAPPEV MDP LPDED+DL
Sbjct: 164 LARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDDL 216
>sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 181 bits (458), Expect = 6e-46
Identities = 86/113 (76%), Positives = 91/113 (80%)
Frame = +3
Query: 3 WHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLW 182
WHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW
Sbjct: 104 WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 163
Query: 183 IARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 341
+ARKL+GDPNLEF MPALAPPEV MDP LPDED+DL
Sbjct: 164 LARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQIAQTTALPDEDDDL 216
>sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 181 bits (458), Expect = 6e-46
Identities = 86/113 (76%), Positives = 91/113 (80%)
Frame = +3
Query: 3 WHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLW 182
WHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW
Sbjct: 104 WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 163
Query: 183 IARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 341
+ARKL+GDPNLEF MPALAPPEV MDP LPDED+DL
Sbjct: 164 LARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQNAQATALPDEDDDL 216
>sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 179 bits (454), Expect = 2e-45
Identities = 85/113 (75%), Positives = 90/113 (79%)
Frame = +3
Query: 3 WHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLW 182
WHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW
Sbjct: 104 WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 163
Query: 183 IARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 341
+ARKL+GDPN EF MPALAPPEV MDP LPDED+DL
Sbjct: 164 LARKLIGDPNFEFVAMPALAPPEVVMDPALAAQYEQDLQHAQATALPDEDDDL 216
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,592,366
Number of Sequences: 369166
Number of extensions: 751179
Number of successful extensions: 2503
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2471
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)