Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_K16
(557 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase... 172 5e-43
sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase... 171 9e-43
sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1 171 1e-42
sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran 170 2e-42
sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase... 169 3e-42
sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase... 169 3e-42
sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase... 169 4e-42
sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase... 169 4e-42
sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase... 169 4e-42
sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase... 167 1e-41
>sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 172 bits (436), Expect = 5e-43
Identities = 82/109 (75%), Positives = 88/109 (80%)
Frame = +3
Query: 3 LVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARK 182
LVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARK
Sbjct: 107 LVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166
Query: 183 LVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 329
L+GDPNLEF EMPALAPPE+ MDP LPDED+DL
Sbjct: 167 LIGDPNLEFVEMPALAPPEIAMDPTLAAQYEHDLKVASETALPDEDDDL 215
>sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 215
Score = 171 bits (434), Expect = 9e-43
Identities = 83/109 (76%), Positives = 88/109 (80%)
Frame = +3
Query: 3 LVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARK 182
LVRVCENIPIVL GNKVD+KDRKVKAKTITFHRKKNLQYYD+SAKSNYNFEKP LW+ARK
Sbjct: 107 LVRVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLARK 166
Query: 183 LVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 329
L+GDPNLEF MPALAPPEV MDP V LPD+DEDL
Sbjct: 167 LLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAELPDDDEDL 215
>sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1
Length = 215
Score = 171 bits (432), Expect = 1e-42
Identities = 81/109 (74%), Positives = 88/109 (80%)
Frame = +3
Query: 3 LVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARK 182
L RVCENIPIVL GNKVD+KDRKVKAKTITFHRKKNLQYYD+SAKSNYNFEKPFLW+ARK
Sbjct: 107 LARVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166
Query: 183 LVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 329
L+GDPNLEF MPALAPPEV MDP + LPD+D+DL
Sbjct: 167 LLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLDNAAKADLPDDDDDL 215
>sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran
Length = 216
Score = 170 bits (430), Expect = 2e-42
Identities = 82/109 (75%), Positives = 87/109 (79%)
Frame = +3
Query: 3 LVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARK 182
LVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARK
Sbjct: 108 LVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 167
Query: 183 LVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 329
LVGDPNLEF MPAL PPEV MD +W LPDEDE+L
Sbjct: 168 LVGDPNLEFVAMPALLPPEVKMDKDWQAQIERDLQEAQATALPDEDEEL 216
>sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 169 bits (429), Expect = 3e-42
Identities = 81/109 (74%), Positives = 88/109 (80%)
Frame = +3
Query: 3 LVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARK 182
LVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARK
Sbjct: 107 LVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166
Query: 183 LVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 329
L+GDPNLEF MPALAPPE+ MDP+ LPDED+DL
Sbjct: 167 LIGDPNLEFVAMPALAPPEILMDPSLAAQYEHDLKVASETALPDEDDDL 215
>sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 169 bits (429), Expect = 3e-42
Identities = 81/109 (74%), Positives = 88/109 (80%)
Frame = +3
Query: 3 LVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARK 182
LVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARK
Sbjct: 107 LVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166
Query: 183 LVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 329
L+GDPNLEF EM ALAPPE+ MDP+ LPDED+DL
Sbjct: 167 LIGDPNLEFVEMSALAPPEIAMDPSLAAQYEHDLKVASETALPDEDDDL 215
>sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
(Androgen receptor-associated protein 24)
sp|P62828|RAN_RAT GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62827|RAN_MOUSE GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62825|RAN_CANFA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 169 bits (428), Expect = 4e-42
Identities = 82/109 (75%), Positives = 87/109 (79%)
Frame = +3
Query: 3 LVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARK 182
LVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARK
Sbjct: 108 LVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 167
Query: 183 LVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 329
L+GDPNLEF MPALAPPEV MDP LPDED+DL
Sbjct: 168 LIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDDL 216
>sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 169 bits (428), Expect = 4e-42
Identities = 82/109 (75%), Positives = 87/109 (79%)
Frame = +3
Query: 3 LVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARK 182
LVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARK
Sbjct: 108 LVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 167
Query: 183 LVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 329
L+GDPNLEF MPALAPPEV MDP LPDED+DL
Sbjct: 168 LIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQIAQTTALPDEDDDL 216
>sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 169 bits (428), Expect = 4e-42
Identities = 82/109 (75%), Positives = 87/109 (79%)
Frame = +3
Query: 3 LVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARK 182
LVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARK
Sbjct: 108 LVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 167
Query: 183 LVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 329
L+GDPNLEF MPALAPPEV MDP LPDED+DL
Sbjct: 168 LIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQNAQATALPDEDDDL 216
>sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 167 bits (424), Expect = 1e-41
Identities = 81/109 (74%), Positives = 86/109 (78%)
Frame = +3
Query: 3 LVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARK 182
LVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARK
Sbjct: 108 LVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 167
Query: 183 LVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLPDEDEDL 329
L+GDPN EF MPALAPPEV MDP LPDED+DL
Sbjct: 168 LIGDPNFEFVAMPALAPPEVVMDPALAAQYEQDLQHAQATALPDEDDDL 216
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,491,220
Number of Sequences: 369166
Number of extensions: 995905
Number of successful extensions: 2899
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2868
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)