Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_E21
(319 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase... 137 1e-32
sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1 136 2e-32
sp|P38544|RAN_ONCVO GTP-binding nuclear protein Ran (GTPase... 135 3e-32
sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran 135 4e-32
sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase... 133 1e-31
sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase... 133 1e-31
sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase... 132 3e-31
sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase... 131 4e-31
sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase... 130 7e-31
sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase... 130 7e-31
>sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 215
Score = 137 bits (344), Expect = 1e-32
Identities = 66/83 (79%), Positives = 70/83 (84%)
Frame = +1
Query: 16 KTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNW 195
KTITFHRKKNLQYYD+SAKSNYNFEKP LW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 133 KTITFHRKKNLQYYDISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPPEVQMDPTM 192
Query: 196 VAQCEAVIQQAAIAPLPDEDEDL 264
VAQ E I AA A LPD+DEDL
Sbjct: 193 VAQYEQEIAAAANAELPDDDEDL 215
>sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1
Length = 215
Score = 136 bits (342), Expect = 2e-32
Identities = 63/83 (75%), Positives = 71/83 (85%)
Frame = +1
Query: 16 KTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNW 195
KTITFHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 133 KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDPAM 192
Query: 196 VAQCEAVIQQAAIAPLPDEDEDL 264
+A+ E + AA A LPD+D+DL
Sbjct: 193 IAEYEKDLDNAAKADLPDDDDDL 215
>sp|P38544|RAN_ONCVO GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 215
Score = 135 bits (340), Expect = 3e-32
Identities = 65/83 (78%), Positives = 69/83 (83%)
Frame = +1
Query: 16 KTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNW 195
KTITFHRKKNLQYYD+SAKSNYNFEKP LW+ RKL+GDPNLEF MPALAPPEV MDP
Sbjct: 133 KTITFHRKKNLQYYDISAKSNYNFEKPSLWLVRKLLGDPNLEFVAMPALAPPEVQMDPTM 192
Query: 196 VAQCEAVIQQAAIAPLPDEDEDL 264
VAQ E I AA A LPD+DEDL
Sbjct: 193 VAQYEQEIAAAANAELPDDDEDL 215
>sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran
Length = 216
Score = 135 bits (339), Expect = 4e-32
Identities = 62/83 (74%), Positives = 69/83 (83%)
Frame = +1
Query: 16 KTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNW 195
K+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKLVGDPNLEF MPAL PPEV MD +W
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDW 193
Query: 196 VAQCEAVIQQAAIAPLPDEDEDL 264
AQ E +Q+A LPDEDE+L
Sbjct: 194 QAQIERDLQEAQATALPDEDEEL 216
>sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 133 bits (335), Expect = 1e-31
Identities = 61/83 (73%), Positives = 70/83 (84%)
Frame = +1
Query: 16 KTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNW 195
K+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EMPALAPPE+ MDP
Sbjct: 133 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDPTL 192
Query: 196 VAQCEAVIQQAAIAPLPDEDEDL 264
AQ E ++ A+ LPDED+DL
Sbjct: 193 AAQYEHDLKVASETALPDEDDDL 215
>sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 133 bits (334), Expect = 1e-31
Identities = 62/83 (74%), Positives = 68/83 (81%)
Frame = +1
Query: 16 KTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNW 195
K+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPAL 193
Query: 196 VAQCEAVIQQAAIAPLPDEDEDL 264
AQ E +Q A LPDED+DL
Sbjct: 194 AAQYEQDLQNAQATALPDEDDDL 216
>sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 132 bits (331), Expect = 3e-31
Identities = 62/83 (74%), Positives = 68/83 (81%)
Frame = +1
Query: 16 KTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNW 195
K+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPAL 193
Query: 196 VAQCEAVIQQAAIAPLPDEDEDL 264
AQ E +Q A LPDED+DL
Sbjct: 194 AAQYEQDLQIAQTTALPDEDDDL 216
>sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 131 bits (330), Expect = 4e-31
Identities = 61/83 (73%), Positives = 67/83 (80%)
Frame = +1
Query: 16 KTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNW 195
K+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPN EF MPALAPPEV MDP
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVMDPAL 193
Query: 196 VAQCEAVIQQAAIAPLPDEDEDL 264
AQ E +Q A LPDED+DL
Sbjct: 194 AAQYEQDLQHAQATALPDEDDDL 216
>sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
(Androgen receptor-associated protein 24)
sp|P62828|RAN_RAT GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62827|RAN_MOUSE GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62825|RAN_CANFA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 130 bits (328), Expect = 7e-31
Identities = 61/83 (73%), Positives = 68/83 (81%)
Frame = +1
Query: 16 KTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNW 195
K+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 134 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPAL 193
Query: 196 VAQCEAVIQQAAIAPLPDEDEDL 264
AQ E ++ A LPDED+DL
Sbjct: 194 AAQYEHDLEVAQTTALPDEDDDL 216
>sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 130 bits (328), Expect = 7e-31
Identities = 60/83 (72%), Positives = 70/83 (84%)
Frame = +1
Query: 16 KTITFHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNW 195
K+I FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPE+ MDP+
Sbjct: 133 KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILMDPSL 192
Query: 196 VAQCEAVIQQAAIAPLPDEDEDL 264
AQ E ++ A+ LPDED+DL
Sbjct: 193 AAQYEHDLKVASETALPDEDDDL 215
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,893,225
Number of Sequences: 369166
Number of extensions: 632150
Number of successful extensions: 1763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1762
length of database: 68,354,980
effective HSP length: 74
effective length of database: 54,684,590
effective search space used: 1695222290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)