Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_E12
(736 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1 350 3e-96
sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran 348 6e-96
sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase... 347 2e-95
sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase... 345 7e-95
sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase... 345 7e-95
sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase... 345 7e-95
sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase... 345 9e-95
sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase... 344 1e-94
sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase... 344 1e-94
sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase... 343 2e-94
>sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1
Length = 215
Score = 350 bits (897), Expect = 3e-96
Identities = 164/199 (82%), Positives = 176/199 (88%)
Frame = +3
Query: 33 DGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRD 212
DGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG+IRFNVWDTAGQEKFGGLRD
Sbjct: 17 DGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRD 76
Query: 213 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTIT 392
GYYIQGQCAIIMFDVT+R+TYKNVPNWHRDL RVCENIPIVL GNKVD+KDRKVKAKTIT
Sbjct: 77 GYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKDRKVKAKTIT 136
Query: 393 FHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXX 572
FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP +
Sbjct: 137 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEY 196
Query: 573 XXXXXXXXXXPLPDEDEDL 629
LPD+D+DL
Sbjct: 197 EKDLDNAAKADLPDDDDDL 215
>sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran
Length = 216
Score = 348 bits (894), Expect = 6e-96
Identities = 165/199 (82%), Positives = 174/199 (87%)
Frame = +3
Query: 33 DGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRD 212
DGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG IRFNVWDTAGQEKFGGLRD
Sbjct: 18 DGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTAGQEKFGGLRD 77
Query: 213 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTIT 392
GYYIQGQCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I
Sbjct: 78 GYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV 137
Query: 393 FHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXX 572
FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKLVGDPNLEF MPAL PPEV MD +W
Sbjct: 138 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQI 197
Query: 573 XXXXXXXXXXPLPDEDEDL 629
LPDEDE+L
Sbjct: 198 ERDLQEAQATALPDEDEEL 216
>sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 347 bits (890), Expect = 2e-95
Identities = 163/199 (81%), Positives = 174/199 (87%)
Frame = +3
Query: 33 DGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRD 212
DGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQEKFGGLRD
Sbjct: 17 DGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRD 76
Query: 213 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTIT 392
GYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I
Sbjct: 77 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV 136
Query: 393 FHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXX 572
FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EMPALAPPE+ MDP
Sbjct: 137 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDPTLAAQY 196
Query: 573 XXXXXXXXXXPLPDEDEDL 629
LPDED+DL
Sbjct: 197 EHDLKVASETALPDEDDDL 215
>sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
(Androgen receptor-associated protein 24)
sp|P62828|RAN_RAT GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62827|RAN_MOUSE GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62825|RAN_CANFA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 345 bits (885), Expect = 7e-95
Identities = 164/199 (82%), Positives = 173/199 (86%)
Frame = +3
Query: 33 DGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRD 212
DGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEKFGGLRD
Sbjct: 18 DGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD 77
Query: 213 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTIT 392
GYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I
Sbjct: 78 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV 137
Query: 393 FHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXX 572
FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 138 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQY 197
Query: 573 XXXXXXXXXXPLPDEDEDL 629
LPDED+DL
Sbjct: 198 EHDLEVAQTTALPDEDDDL 216
>sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 345 bits (885), Expect = 7e-95
Identities = 164/199 (82%), Positives = 173/199 (86%)
Frame = +3
Query: 33 DGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRD 212
DGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEKFGGLRD
Sbjct: 18 DGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD 77
Query: 213 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTIT 392
GYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I
Sbjct: 78 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV 137
Query: 393 FHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXX 572
FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 138 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQY 197
Query: 573 XXXXXXXXXXPLPDEDEDL 629
LPDED+DL
Sbjct: 198 EQDLQIAQTTALPDEDDDL 216
>sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 345 bits (885), Expect = 7e-95
Identities = 164/199 (82%), Positives = 173/199 (86%)
Frame = +3
Query: 33 DGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRD 212
DGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEKFGGLRD
Sbjct: 18 DGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD 77
Query: 213 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTIT 392
GYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I
Sbjct: 78 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV 137
Query: 393 FHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXX 572
FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP
Sbjct: 138 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQY 197
Query: 573 XXXXXXXXXXPLPDEDEDL 629
LPDED+DL
Sbjct: 198 EQDLQNAQATALPDEDDDL 216
>sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 215
Score = 345 bits (884), Expect = 9e-95
Identities = 163/199 (81%), Positives = 174/199 (87%)
Frame = +3
Query: 33 DGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRD 212
DGGTGKTTFVKRH+TG+FEKKYVATLGVEVHPL F+T RG+IRFNVWDTAGQEKFGGLRD
Sbjct: 17 DGGTGKTTFVKRHLTGDFEKKYVATLGVEVHPLIFHTNRGQIRFNVWDTAGQEKFGGLRD 76
Query: 213 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTIT 392
GYYIQGQCA MFDVT+R+TYKNVPNWHRDLVRVCENIPIVL GNKVD+KDRKVKAKTIT
Sbjct: 77 GYYIQGQCAFNMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKTIT 136
Query: 393 FHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXX 572
FHRKKNLQYYD+SAKSNYNFEKP LW+ARKL+GDPNLEF MPALAPPEV MDP V
Sbjct: 137 FHRKKNLQYYDISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPPEVQMDPTMVAQY 196
Query: 573 XXXXXXXXXXPLPDEDEDL 629
LPD+DEDL
Sbjct: 197 EQEIAAAANAELPDDDEDL 215
>sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 344 bits (883), Expect = 1e-94
Identities = 162/199 (81%), Positives = 174/199 (87%)
Frame = +3
Query: 33 DGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRD 212
DGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQEKFGGLRD
Sbjct: 17 DGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRD 76
Query: 213 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTIT 392
GYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I
Sbjct: 77 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV 136
Query: 393 FHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXX 572
FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPE+ MDP+
Sbjct: 137 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILMDPSLAAQY 196
Query: 573 XXXXXXXXXXPLPDEDEDL 629
LPDED+DL
Sbjct: 197 EHDLKVASETALPDEDDDL 215
>sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 344 bits (883), Expect = 1e-94
Identities = 162/199 (81%), Positives = 174/199 (87%)
Frame = +3
Query: 33 DGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRD 212
DGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQEKFGGLRD
Sbjct: 17 DGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQEKFGGLRD 76
Query: 213 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTIT 392
GYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I
Sbjct: 77 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV 136
Query: 393 FHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXX 572
FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPNLEF EM ALAPPE+ MDP+
Sbjct: 137 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAMDPSLAAQY 196
Query: 573 XXXXXXXXXXPLPDEDEDL 629
LPDED+DL
Sbjct: 197 EHDLKVASETALPDEDDDL 215
>sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 343 bits (881), Expect = 2e-94
Identities = 163/199 (81%), Positives = 172/199 (86%)
Frame = +3
Query: 33 DGGTGKTTFVKRHVTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRD 212
DGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEKFGGLRD
Sbjct: 18 DGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD 77
Query: 213 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTIT 392
GYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I
Sbjct: 78 GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV 137
Query: 393 FHRKKNLQYYDVSAKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXX 572
FHRKKNLQYYD+SAKSNYNFEKPFLW+ARKL+GDPN EF MPALAPPEV MDP
Sbjct: 138 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVMDPALAAQY 197
Query: 573 XXXXXXXXXXPLPDEDEDL 629
LPDED+DL
Sbjct: 198 EQDLQHAQATALPDEDDDL 216
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,002,048
Number of Sequences: 369166
Number of extensions: 1680509
Number of successful extensions: 5008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4540
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)