Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_A02
(608 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran 318 5e-87
sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1 318 7e-87
sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase... 315 4e-86
sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase... 313 2e-85
sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase... 313 2e-85
sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase... 313 2e-85
sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase... 313 2e-85
sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase... 313 3e-85
sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase... 313 3e-85
sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase... 312 5e-85
>sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran
Length = 216
Score = 318 bits (816), Expect = 5e-87
Identities = 151/184 (82%), Positives = 159/184 (86%)
Frame = +1
Query: 1 VTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 180
+TGEFEKKYVATLGVEVHPL F+T RG IRFNVWDTAGQEKFGGLRDGYYIQGQCA+IMF
Sbjct: 31 MTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMF 90
Query: 181 DVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVS 360
DVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+S
Sbjct: 91 DVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDIS 150
Query: 361 AKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLP 540
AKSNYNFEKPFLW+ARKLVGDPNLEF MPAL PPEV MD +W LP
Sbjct: 151 AKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERDLQEAQATALP 210
Query: 541 DEDE 552
DEDE
Sbjct: 211 DEDE 214
>sp|O17915|RAN_CAEEL GTP-binding nuclear protein ran-1
Length = 215
Score = 318 bits (815), Expect = 7e-87
Identities = 149/184 (80%), Positives = 161/184 (87%)
Frame = +1
Query: 1 VTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 180
+TGEFEKKYVATLGVEVHPL F+T RG+IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF
Sbjct: 30 LTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 89
Query: 181 DVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVS 360
DVT+R+TYKNVPNWHRDL RVCENIPIVL GNKVD+KDRKVKAKTITFHRKKNLQYYD+S
Sbjct: 90 DVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDIS 149
Query: 361 AKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLP 540
AKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP + LP
Sbjct: 150 AKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLDNAAKADLP 209
Query: 541 DEDE 552
D+D+
Sbjct: 210 DDDD 213
>sp|P79735|RAN_BRARE GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 315 bits (808), Expect = 4e-86
Identities = 148/184 (80%), Positives = 159/184 (86%)
Frame = +1
Query: 1 VTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 180
+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQEKFGGLRDGYYIQ QCAIIMF
Sbjct: 30 LTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMF 89
Query: 181 DVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVS 360
DVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+S
Sbjct: 90 DVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDIS 149
Query: 361 AKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLP 540
AKSNYNFEKPFLW+ARKL+GDPNLEF EMPALAPPE+ MDP LP
Sbjct: 150 AKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDPTLAAQYEHDLKVASETALP 209
Query: 541 DEDE 552
DED+
Sbjct: 210 DEDD 213
>sp|P62826|RAN_HUMAN GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
(Androgen receptor-associated protein 24)
sp|P62828|RAN_RAT GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62827|RAN_MOUSE GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
sp|P62825|RAN_CANFA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 313 bits (803), Expect = 2e-85
Identities = 149/184 (80%), Positives = 158/184 (85%)
Frame = +1
Query: 1 VTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 180
+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEKFGGLRDGYYIQ QCAIIMF
Sbjct: 31 LTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMF 90
Query: 181 DVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVS 360
DVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+S
Sbjct: 91 DVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDIS 150
Query: 361 AKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLP 540
AKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP LP
Sbjct: 151 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALP 210
Query: 541 DEDE 552
DED+
Sbjct: 211 DEDD 214
>sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 313 bits (803), Expect = 2e-85
Identities = 149/184 (80%), Positives = 158/184 (85%)
Frame = +1
Query: 1 VTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 180
+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEKFGGLRDGYYIQ QCAIIMF
Sbjct: 31 LTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMF 90
Query: 181 DVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVS 360
DVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+S
Sbjct: 91 DVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDIS 150
Query: 361 AKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLP 540
AKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP LP
Sbjct: 151 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQIAQTTALP 210
Query: 541 DEDE 552
DED+
Sbjct: 211 DEDD 214
>sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 313 bits (803), Expect = 2e-85
Identities = 149/184 (80%), Positives = 158/184 (85%)
Frame = +1
Query: 1 VTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 180
+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEKFGGLRDGYYIQ QCAIIMF
Sbjct: 31 LTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMF 90
Query: 181 DVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVS 360
DVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+S
Sbjct: 91 DVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDIS 150
Query: 361 AKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLP 540
AKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPEV MDP LP
Sbjct: 151 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQNAQATALP 210
Query: 541 DEDE 552
DED+
Sbjct: 211 DEDD 214
>sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 215
Score = 313 bits (802), Expect = 2e-85
Identities = 148/184 (80%), Positives = 159/184 (86%)
Frame = +1
Query: 1 VTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 180
+TG+FEKKYVATLGVEVHPL F+T RG+IRFNVWDTAGQEKFGGLRDGYYIQGQCA MF
Sbjct: 30 LTGDFEKKYVATLGVEVHPLIFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAFNMF 89
Query: 181 DVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVS 360
DVT+R+TYKNVPNWHRDLVRVCENIPIVL GNKVD+KDRKVKAKTITFHRKKNLQYYD+S
Sbjct: 90 DVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDIS 149
Query: 361 AKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLP 540
AKSNYNFEKP LW+ARKL+GDPNLEF MPALAPPEV MDP V LP
Sbjct: 150 AKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAELP 209
Query: 541 DEDE 552
D+DE
Sbjct: 210 DDDE 213
>sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 313 bits (801), Expect = 3e-85
Identities = 147/184 (79%), Positives = 159/184 (86%)
Frame = +1
Query: 1 VTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 180
+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQEKFGGLRDGYYIQ QCAIIMF
Sbjct: 30 LTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMF 89
Query: 181 DVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVS 360
DVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+S
Sbjct: 90 DVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDIS 149
Query: 361 AKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLP 540
AKSNYNFEKPFLW+ARKL+GDPNLEF MPALAPPE+ MDP+ LP
Sbjct: 150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILMDPSLAAQYEHDLKVASETALP 209
Query: 541 DEDE 552
DED+
Sbjct: 210 DEDD 213
>sp|Q7ZZX9|RAN_CARAU GTP-binding nuclear protein Ran (GTPase Ran)
Length = 215
Score = 313 bits (801), Expect = 3e-85
Identities = 147/184 (79%), Positives = 159/184 (86%)
Frame = +1
Query: 1 VTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 180
+TGEFEKKYVATLGVEVHPL F+T RG I++NVWDTAGQEKFGGLRDGYYIQ QCAIIMF
Sbjct: 30 LTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMF 89
Query: 181 DVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVS 360
DVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+S
Sbjct: 90 DVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDIS 149
Query: 361 AKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLP 540
AKSNYNFEKPFLW+ARKL+GDPNLEF EM ALAPPE+ MDP+ LP
Sbjct: 150 AKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAMDPSLAAQYEHDLKVASETALP 209
Query: 541 DEDE 552
DED+
Sbjct: 210 DEDD 213
>sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran (GTPase Ran) (Ras-like protein TC4)
Length = 216
Score = 312 bits (799), Expect = 5e-85
Identities = 148/184 (80%), Positives = 157/184 (85%)
Frame = +1
Query: 1 VTGEFEKKYVATLGVEVHPLEFNTTRGKIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 180
+TGEFEKKYVATLGVEVHPL F+T RG I+FNVWDTAGQEKFGGLRDGYYIQ QCAIIMF
Sbjct: 31 LTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMF 90
Query: 181 DVTSRITYKNVPNWHRDLVRVCENIPIVLVGNKVDIKDRKVKAKTITFHRKKNLQYYDVS 360
DVTSR+TYKNVPNWHRDLVRVCENIPIVL GNKVDIKDRKVKAK+I FHRKKNLQYYD+S
Sbjct: 91 DVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDIS 150
Query: 361 AKSNYNFEKPFLWIARKLVGDPNLEFAEMPALAPPEVPMDPNWVXXXXXXXXXXXXXPLP 540
AKSNYNFEKPFLW+ARKL+GDPN EF MPALAPPEV MDP LP
Sbjct: 151 AKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVMDPALAAQYEQDLQHAQATALP 210
Query: 541 DEDE 552
DED+
Sbjct: 211 DEDD 214
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,328,920
Number of Sequences: 369166
Number of extensions: 1451038
Number of successful extensions: 4533
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4233
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)